Hb_020035_010

Information

Type -
Description -
Location Contig20035: 24578-25356
Sequence    

Annotation

kegg
ID mus:103979984
description protein DCL, chloroplastic
nr
ID XP_006601272.1
description PREDICTED: DNA-directed RNA polymerase V subunit 1-like isoform X2 [Glycine max]
swissprot
ID -
description -
trembl
ID I1M8Q8
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020035_010 0.0 - - PREDICTED: DNA-directed RNA polymerase V subunit 1-like isoform X2 [Glycine max]
2 Hb_011644_010 0.2312424796 - - PREDICTED: probable choline-phosphate cytidylyltransferase [Elaeis guineensis]
3 Hb_002344_120 0.2358832286 - - -
4 Hb_009346_040 0.244925791 - - -
5 Hb_007532_040 0.2462584497 - - -
6 Hb_010812_150 0.2482784168 - - hypothetical protein CICLE_v10009763mg [Citrus clementina]
7 Hb_000345_430 0.257823657 - - 40S ribosomal protein S24A [Hevea brasiliensis]
8 Hb_001017_060 0.2591191427 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
9 Hb_000367_030 0.271666304 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
10 Hb_004421_020 0.2741001938 - - -
11 Hb_007913_040 0.2787112115 - - sterol desaturase, putative [Ricinus communis]
12 Hb_020035_020 0.2788123395 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
13 Hb_006995_040 0.2805070796 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
14 Hb_000181_380 0.2805104655 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
15 Hb_135940_010 0.2812642651 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
16 Hb_000258_030 0.2839101428 - - -
17 Hb_000656_340 0.2843856224 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
18 Hb_000665_110 0.2846004693 - - Ribosomal protein S11-beta [Theobroma cacao]
19 Hb_000562_060 0.285388923 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
20 Hb_000097_010 0.2855088938 - - -

Gene co-expression network

sample Hb_020035_010 Hb_020035_010 Hb_011644_010 Hb_011644_010 Hb_020035_010--Hb_011644_010 Hb_002344_120 Hb_002344_120 Hb_020035_010--Hb_002344_120 Hb_009346_040 Hb_009346_040 Hb_020035_010--Hb_009346_040 Hb_007532_040 Hb_007532_040 Hb_020035_010--Hb_007532_040 Hb_010812_150 Hb_010812_150 Hb_020035_010--Hb_010812_150 Hb_000345_430 Hb_000345_430 Hb_020035_010--Hb_000345_430 Hb_000097_010 Hb_000097_010 Hb_011644_010--Hb_000097_010 Hb_135940_010 Hb_135940_010 Hb_011644_010--Hb_135940_010 Hb_001017_060 Hb_001017_060 Hb_011644_010--Hb_001017_060 Hb_029142_070 Hb_029142_070 Hb_011644_010--Hb_029142_070 Hb_000656_340 Hb_000656_340 Hb_011644_010--Hb_000656_340 Hb_014834_040 Hb_014834_040 Hb_011644_010--Hb_014834_040 Hb_005489_010 Hb_005489_010 Hb_002344_120--Hb_005489_010 Hb_002025_210 Hb_002025_210 Hb_002344_120--Hb_002025_210 Hb_002344_120--Hb_009346_040 Hb_000665_110 Hb_000665_110 Hb_002344_120--Hb_000665_110 Hb_002344_120--Hb_001017_060 Hb_009346_040--Hb_007532_040 Hb_009346_040--Hb_001017_060 Hb_008221_110 Hb_008221_110 Hb_009346_040--Hb_008221_110 Hb_175976_010 Hb_175976_010 Hb_009346_040--Hb_175976_010 Hb_020035_020 Hb_020035_020 Hb_009346_040--Hb_020035_020 Hb_009346_040--Hb_011644_010 Hb_000493_010 Hb_000493_010 Hb_007532_040--Hb_000493_010 Hb_012305_120 Hb_012305_120 Hb_007532_040--Hb_012305_120 Hb_001296_030 Hb_001296_030 Hb_007532_040--Hb_001296_030 Hb_007532_040--Hb_020035_020 Hb_008841_010 Hb_008841_010 Hb_007532_040--Hb_008841_010 Hb_006541_020 Hb_006541_020 Hb_010812_150--Hb_006541_020 Hb_000181_380 Hb_000181_380 Hb_010812_150--Hb_000181_380 Hb_005054_040 Hb_005054_040 Hb_010812_150--Hb_005054_040 Hb_000879_210 Hb_000879_210 Hb_010812_150--Hb_000879_210 Hb_004429_110 Hb_004429_110 Hb_010812_150--Hb_004429_110 Hb_000367_030 Hb_000367_030 Hb_010812_150--Hb_000367_030 Hb_009659_020 Hb_009659_020 Hb_000345_430--Hb_009659_020 Hb_015978_070 Hb_015978_070 Hb_000345_430--Hb_015978_070 Hb_129204_010 Hb_129204_010 Hb_000345_430--Hb_129204_010 Hb_000345_430--Hb_012305_120 Hb_007520_060 Hb_007520_060 Hb_000345_430--Hb_007520_060 Hb_001587_060 Hb_001587_060 Hb_000345_430--Hb_001587_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.87818 0 2.05753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.41677 2.4066 0.387904 0.246414 0.422071

CAGE analysis