Hb_002344_120

Information

Type -
Description -
Location Contig2344: 93560-98667
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24588: 73553-96678
cDNA
(Sanger)
(ID:Location)		 041_M10r.ab1: 95819-96520 , 045_L16r.ab1: 95976-96531

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002344_120 0.0 - - -
2 Hb_005489_010 0.1659493464 - - hypothetical protein POPTR_0011s11420g [Populus trichocarpa]
3 Hb_002025_210 0.172311208 - - -
4 Hb_020035_010 0.2358832286 - - PREDICTED: DNA-directed RNA polymerase V subunit 1-like isoform X2 [Glycine max]
5 Hb_009346_040 0.2415271741 - - -
6 Hb_000665_110 0.2533248307 - - Ribosomal protein S11-beta [Theobroma cacao]
7 Hb_001017_060 0.2748544513 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
8 Hb_011644_010 0.2780591673 - - PREDICTED: probable choline-phosphate cytidylyltransferase [Elaeis guineensis]
9 Hb_013492_010 0.2897020357 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
10 Hb_006995_040 0.297445292 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
11 Hb_133702_040 0.2981495435 - - -
12 Hb_000994_110 0.2989120946 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000562_060 0.3010922435 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
14 Hb_007913_040 0.3027850799 - - sterol desaturase, putative [Ricinus communis]
15 Hb_000656_340 0.3109433129 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
16 Hb_014834_140 0.3129079038 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
17 Hb_000345_430 0.3171465114 - - 40S ribosomal protein S24A [Hevea brasiliensis]
18 Hb_163599_010 0.3173521898 - - hypothetical protein RCOM_1579620 [Ricinus communis]
19 Hb_001405_130 0.3183045472 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
20 Hb_150766_020 0.3195051372 - - hypothetical protein VITISV_030841 [Vitis vinifera]

Gene co-expression network

sample Hb_002344_120 Hb_002344_120 Hb_005489_010 Hb_005489_010 Hb_002344_120--Hb_005489_010 Hb_002025_210 Hb_002025_210 Hb_002344_120--Hb_002025_210 Hb_020035_010 Hb_020035_010 Hb_002344_120--Hb_020035_010 Hb_009346_040 Hb_009346_040 Hb_002344_120--Hb_009346_040 Hb_000665_110 Hb_000665_110 Hb_002344_120--Hb_000665_110 Hb_001017_060 Hb_001017_060 Hb_002344_120--Hb_001017_060 Hb_005489_010--Hb_002025_210 Hb_005489_010--Hb_000665_110 Hb_000562_060 Hb_000562_060 Hb_005489_010--Hb_000562_060 Hb_150766_020 Hb_150766_020 Hb_005489_010--Hb_150766_020 Hb_001233_020 Hb_001233_020 Hb_005489_010--Hb_001233_020 Hb_000994_110 Hb_000994_110 Hb_002025_210--Hb_000994_110 Hb_002025_210--Hb_000665_110 Hb_013492_010 Hb_013492_010 Hb_002025_210--Hb_013492_010 Hb_002025_210--Hb_150766_020 Hb_011644_010 Hb_011644_010 Hb_020035_010--Hb_011644_010 Hb_020035_010--Hb_009346_040 Hb_007532_040 Hb_007532_040 Hb_020035_010--Hb_007532_040 Hb_010812_150 Hb_010812_150 Hb_020035_010--Hb_010812_150 Hb_000345_430 Hb_000345_430 Hb_020035_010--Hb_000345_430 Hb_009346_040--Hb_007532_040 Hb_009346_040--Hb_001017_060 Hb_008221_110 Hb_008221_110 Hb_009346_040--Hb_008221_110 Hb_175976_010 Hb_175976_010 Hb_009346_040--Hb_175976_010 Hb_020035_020 Hb_020035_020 Hb_009346_040--Hb_020035_020 Hb_009346_040--Hb_011644_010 Hb_000665_110--Hb_000562_060 Hb_000181_380 Hb_000181_380 Hb_000665_110--Hb_000181_380 Hb_000665_110--Hb_001233_020 Hb_001220_010 Hb_001220_010 Hb_000665_110--Hb_001220_010 Hb_001017_060--Hb_008221_110 Hb_001017_060--Hb_175976_010 Hb_007534_020 Hb_007534_020 Hb_001017_060--Hb_007534_020 Hb_000258_030 Hb_000258_030 Hb_001017_060--Hb_000258_030 Hb_014834_040 Hb_014834_040 Hb_001017_060--Hb_014834_040 Hb_001017_060--Hb_011644_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.100479 0.0173624 0.0784509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.169375 0.099922 0 0.0133516 0

CAGE analysis