Hb_010812_150

Information

Type -
Description -
Location Contig10812: 105198-109657
Sequence    

Annotation

kegg
ID zma:100280559
description 40S ribosomal protein S11
nr
ID XP_006450367.1
description hypothetical protein CICLE_v10009763mg [Citrus clementina]
swissprot
ID Q9M5M1
description 40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1
trembl
ID V4UC37
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009763mg PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02511: 107352-107884 , PASA_asmbl_02512: 109291-109642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010812_150 0.0 - - hypothetical protein CICLE_v10009763mg [Citrus clementina]
2 Hb_006541_020 0.1760265305 - - unknown [Lotus japonicus]
3 Hb_000181_380 0.1849216637 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
4 Hb_005054_040 0.1856708425 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
5 Hb_000879_210 0.1871138952 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
6 Hb_004429_110 0.1975539504 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_000367_030 0.1996259933 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
8 Hb_129204_010 0.2000292763 - - LOC100284182 [Zea mays]
9 Hb_000025_240 0.2013385934 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
10 Hb_004421_020 0.2113314619 - - -
11 Hb_006718_010 0.2123748024 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
12 Hb_008748_020 0.2125069124 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
13 Hb_000345_430 0.2141621678 - - 40S ribosomal protein S24A [Hevea brasiliensis]
14 Hb_003777_040 0.2157172844 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
15 Hb_000097_010 0.2191642852 - - -
16 Hb_005245_070 0.2224764429 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
17 Hb_001195_490 0.2225528935 - - hypothetical protein glysoja_018593 [Glycine soja]
18 Hb_000599_280 0.2281426686 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
19 Hb_001935_150 0.2326993376 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
20 Hb_000975_230 0.2329702913 - - hypothetical protein ZEAMMB73_864543 [Zea mays]

Gene co-expression network

sample Hb_010812_150 Hb_010812_150 Hb_006541_020 Hb_006541_020 Hb_010812_150--Hb_006541_020 Hb_000181_380 Hb_000181_380 Hb_010812_150--Hb_000181_380 Hb_005054_040 Hb_005054_040 Hb_010812_150--Hb_005054_040 Hb_000879_210 Hb_000879_210 Hb_010812_150--Hb_000879_210 Hb_004429_110 Hb_004429_110 Hb_010812_150--Hb_004429_110 Hb_000367_030 Hb_000367_030 Hb_010812_150--Hb_000367_030 Hb_000025_240 Hb_000025_240 Hb_006541_020--Hb_000025_240 Hb_008748_020 Hb_008748_020 Hb_006541_020--Hb_008748_020 Hb_006718_010 Hb_006718_010 Hb_006541_020--Hb_006718_010 Hb_007520_060 Hb_007520_060 Hb_006541_020--Hb_007520_060 Hb_000367_210 Hb_000367_210 Hb_006541_020--Hb_000367_210 Hb_006541_020--Hb_000367_030 Hb_014834_030 Hb_014834_030 Hb_000181_380--Hb_014834_030 Hb_001935_150 Hb_001935_150 Hb_000181_380--Hb_001935_150 Hb_000975_180 Hb_000975_180 Hb_000181_380--Hb_000975_180 Hb_021924_010 Hb_021924_010 Hb_000181_380--Hb_021924_010 Hb_000463_130 Hb_000463_130 Hb_000181_380--Hb_000463_130 Hb_000181_380--Hb_006541_020 Hb_005054_040--Hb_008748_020 Hb_001635_130 Hb_001635_130 Hb_005054_040--Hb_001635_130 Hb_154141_030 Hb_154141_030 Hb_005054_040--Hb_154141_030 Hb_002900_130 Hb_002900_130 Hb_005054_040--Hb_002900_130 Hb_005245_070 Hb_005245_070 Hb_005054_040--Hb_005245_070 Hb_005054_040--Hb_006541_020 Hb_000431_160 Hb_000431_160 Hb_000879_210--Hb_000431_160 Hb_000617_110 Hb_000617_110 Hb_000879_210--Hb_000617_110 Hb_044653_060 Hb_044653_060 Hb_000879_210--Hb_044653_060 Hb_004545_130 Hb_004545_130 Hb_000879_210--Hb_004545_130 Hb_000819_070 Hb_000819_070 Hb_000879_210--Hb_000819_070 Hb_000879_210--Hb_008748_020 Hb_000454_180 Hb_000454_180 Hb_004429_110--Hb_000454_180 Hb_004735_050 Hb_004735_050 Hb_004429_110--Hb_004735_050 Hb_006588_080 Hb_006588_080 Hb_004429_110--Hb_006588_080 Hb_004429_110--Hb_000617_110 Hb_001105_090 Hb_001105_090 Hb_004429_110--Hb_001105_090 Hb_000635_080 Hb_000635_080 Hb_004429_110--Hb_000635_080 Hb_000367_030--Hb_006718_010 Hb_002843_210 Hb_002843_210 Hb_000367_030--Hb_002843_210 Hb_000367_030--Hb_005245_070 Hb_000367_030--Hb_000025_240 Hb_000367_030--Hb_007520_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0303798 0.326292 0 0.225685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.648892 1.09292 0.128481 0.148913 0.142264

CAGE analysis