Hb_005054_040

Information

Type -
Description -
Location Contig5054: 43217-44951
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20140g
description POPTRDRAFT_833785; 60S ribosomal protein L35a
nr
ID XP_012454296.1
description PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
swissprot
ID Q9C912
description 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1
trembl
ID I3NML8
description 60S ribosomal protein L35aA OS=Hevea brasiliensis GN=RPL35aA PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l35a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46048: 43113-44945
cDNA
(Sanger)
(ID:Location)		 009_I06.ab1: 43127-44945 , 016_M02.ab1: 43131-44945 , 021_G20.ab1: 43131-44945 , 049_L03.ab1: 43180-44945

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_040 0.0 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
2 Hb_008748_020 0.1240899892 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
3 Hb_001635_130 0.1314956739 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
4 Hb_154141_030 0.1392386363 - - PREDICTED: histone H2AX [Populus euphratica]
5 Hb_002900_130 0.1436116173 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
6 Hb_005245_070 0.1601209848 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
7 Hb_006541_020 0.1609756168 - - unknown [Lotus japonicus]
8 Hb_000181_380 0.1639166085 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
9 Hb_004429_110 0.1645096032 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
10 Hb_003020_330 0.169374456 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
11 Hb_027684_020 0.172467526 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
12 Hb_000025_240 0.1728286396 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
13 Hb_001935_150 0.173175812 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
14 Hb_000997_120 0.1732233738 - - 40S ribosomal protein S15E [Hevea brasiliensis]
15 Hb_004735_050 0.173882267 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
16 Hb_001269_490 0.1747157898 - - conserved hypothetical protein [Ricinus communis]
17 Hb_103118_020 0.1751450612 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
18 Hb_002838_030 0.1757779258 - - 40S ribosomal protein S25A [Hevea brasiliensis]
19 Hb_011377_020 0.1787400354 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
20 Hb_000454_180 0.1791559236 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]

Gene co-expression network

sample Hb_005054_040 Hb_005054_040 Hb_008748_020 Hb_008748_020 Hb_005054_040--Hb_008748_020 Hb_001635_130 Hb_001635_130 Hb_005054_040--Hb_001635_130 Hb_154141_030 Hb_154141_030 Hb_005054_040--Hb_154141_030 Hb_002900_130 Hb_002900_130 Hb_005054_040--Hb_002900_130 Hb_005245_070 Hb_005245_070 Hb_005054_040--Hb_005245_070 Hb_006541_020 Hb_006541_020 Hb_005054_040--Hb_006541_020 Hb_005914_200 Hb_005914_200 Hb_008748_020--Hb_005914_200 Hb_004735_050 Hb_004735_050 Hb_008748_020--Hb_004735_050 Hb_000025_240 Hb_000025_240 Hb_008748_020--Hb_000025_240 Hb_004754_070 Hb_004754_070 Hb_008748_020--Hb_004754_070 Hb_008748_020--Hb_006541_020 Hb_004007_180 Hb_004007_180 Hb_008748_020--Hb_004007_180 Hb_027684_020 Hb_027684_020 Hb_001635_130--Hb_027684_020 Hb_001635_130--Hb_002900_130 Hb_001635_130--Hb_154141_030 Hb_001301_050 Hb_001301_050 Hb_001635_130--Hb_001301_050 Hb_002631_260 Hb_002631_260 Hb_001635_130--Hb_002631_260 Hb_000768_130 Hb_000768_130 Hb_154141_030--Hb_000768_130 Hb_154141_030--Hb_002900_130 Hb_003020_330 Hb_003020_330 Hb_154141_030--Hb_003020_330 Hb_007313_080 Hb_007313_080 Hb_154141_030--Hb_007313_080 Hb_002811_090 Hb_002811_090 Hb_154141_030--Hb_002811_090 Hb_002838_030 Hb_002838_030 Hb_154141_030--Hb_002838_030 Hb_002900_130--Hb_000768_130 Hb_002900_130--Hb_007313_080 Hb_002900_130--Hb_003020_330 Hb_000739_140 Hb_000739_140 Hb_002900_130--Hb_000739_140 Hb_000367_030 Hb_000367_030 Hb_005245_070--Hb_000367_030 Hb_000975_180 Hb_000975_180 Hb_005245_070--Hb_000975_180 Hb_003502_100 Hb_003502_100 Hb_005245_070--Hb_003502_100 Hb_021924_010 Hb_021924_010 Hb_005245_070--Hb_021924_010 Hb_004429_110 Hb_004429_110 Hb_005245_070--Hb_004429_110 Hb_004128_040 Hb_004128_040 Hb_005245_070--Hb_004128_040 Hb_006541_020--Hb_000025_240 Hb_006718_010 Hb_006718_010 Hb_006541_020--Hb_006718_010 Hb_007520_060 Hb_007520_060 Hb_006541_020--Hb_007520_060 Hb_000367_210 Hb_000367_210 Hb_006541_020--Hb_000367_210 Hb_006541_020--Hb_000367_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.276 8.12448 20.6772 181.195 10.5618 91.6734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
154.88 568.11 85.4193 102.953 38.2496

CAGE analysis