Hb_004128_040

Information

Type -
Description -
Location Contig4128: 43090-46143
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_040 0.0 - - -
2 Hb_003502_100 0.1557751314 - - -
3 Hb_005245_070 0.156078068 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
4 Hb_004429_110 0.1749366175 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
5 Hb_021056_010 0.1794961252 - - unnamed protein product [Vitis vinifera]
6 Hb_021924_010 0.1828066464 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
7 Hb_002232_470 0.1860189858 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000975_180 0.1916759506 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
9 Hb_000367_030 0.1937198836 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
10 Hb_000500_210 0.2004755911 - - -
11 Hb_003226_220 0.2012381812 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
12 Hb_182005_010 0.2017774962 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
13 Hb_004755_030 0.2038842638 - - EG964 [Manihot glaziovii]
14 Hb_001488_400 0.2050710464 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
15 Hb_000820_130 0.2065975011 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
16 Hb_000345_430 0.2074726306 - - 40S ribosomal protein S24A [Hevea brasiliensis]
17 Hb_168711_010 0.2087592661 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]
18 Hb_000270_720 0.2103465219 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
19 Hb_000212_470 0.2117285124 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
20 Hb_001377_380 0.212326075 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]

Gene co-expression network

sample Hb_004128_040 Hb_004128_040 Hb_003502_100 Hb_003502_100 Hb_004128_040--Hb_003502_100 Hb_005245_070 Hb_005245_070 Hb_004128_040--Hb_005245_070 Hb_004429_110 Hb_004429_110 Hb_004128_040--Hb_004429_110 Hb_021056_010 Hb_021056_010 Hb_004128_040--Hb_021056_010 Hb_021924_010 Hb_021924_010 Hb_004128_040--Hb_021924_010 Hb_002232_470 Hb_002232_470 Hb_004128_040--Hb_002232_470 Hb_003502_100--Hb_005245_070 Hb_000975_180 Hb_000975_180 Hb_003502_100--Hb_000975_180 Hb_001842_050 Hb_001842_050 Hb_003502_100--Hb_001842_050 Hb_000367_030 Hb_000367_030 Hb_003502_100--Hb_000367_030 Hb_009778_040 Hb_009778_040 Hb_003502_100--Hb_009778_040 Hb_005245_070--Hb_000367_030 Hb_005245_070--Hb_000975_180 Hb_005245_070--Hb_021924_010 Hb_005245_070--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_004429_110--Hb_000454_180 Hb_004735_050 Hb_004735_050 Hb_004429_110--Hb_004735_050 Hb_006588_080 Hb_006588_080 Hb_004429_110--Hb_006588_080 Hb_000617_110 Hb_000617_110 Hb_004429_110--Hb_000617_110 Hb_001105_090 Hb_001105_090 Hb_004429_110--Hb_001105_090 Hb_000635_080 Hb_000635_080 Hb_004429_110--Hb_000635_080 Hb_000820_130 Hb_000820_130 Hb_021056_010--Hb_000820_130 Hb_030954_020 Hb_030954_020 Hb_021056_010--Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_021056_010--Hb_009659_020 Hb_000212_470 Hb_000212_470 Hb_021056_010--Hb_000212_470 Hb_001085_010 Hb_001085_010 Hb_021056_010--Hb_001085_010 Hb_000780_210 Hb_000780_210 Hb_021056_010--Hb_000780_210 Hb_021924_010--Hb_000975_180 Hb_001488_400 Hb_001488_400 Hb_021924_010--Hb_001488_400 Hb_023732_060 Hb_023732_060 Hb_021924_010--Hb_023732_060 Hb_004755_030 Hb_004755_030 Hb_021924_010--Hb_004755_030 Hb_003226_220 Hb_003226_220 Hb_021924_010--Hb_003226_220 Hb_003988_040 Hb_003988_040 Hb_021924_010--Hb_003988_040 Hb_002232_470--Hb_003226_220 Hb_001575_030 Hb_001575_030 Hb_002232_470--Hb_001575_030 Hb_002232_470--Hb_000212_470 Hb_001571_090 Hb_001571_090 Hb_002232_470--Hb_001571_090 Hb_001610_130 Hb_001610_130 Hb_002232_470--Hb_001610_130 Hb_005463_060 Hb_005463_060 Hb_002232_470--Hb_005463_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.644576 0.0465178 0.213012 1.97483 0.31289 0.729179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.44899 6.83799 0.582921 1.3788 0

CAGE analysis