Hb_001488_400

Information

Type -
Description -
Location Contig1488: 316553-317886
Sequence    

Annotation

kegg
ID vvi:100852602
description 60S ribosomal protein L39-3-like
nr
ID XP_006372129.1
description hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
swissprot
ID Q5SMI4
description 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1
trembl
ID U5FJ51
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12030g PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12343: 317121-318100 , PASA_asmbl_12344: 317607-317867
cDNA
(Sanger)
(ID:Location)		 046_I09.ab1: 317407-318100 , 051_L07.ab1: 317409-318100

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_400 0.0 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
2 Hb_021924_010 0.1005433232 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
3 Hb_000975_180 0.1088902642 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
4 Hb_003226_220 0.1148165114 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
5 Hb_000272_050 0.1222343063 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
6 Hb_000212_210 0.138707202 - - unnamed protein product [Coffea canephora]
7 Hb_124055_010 0.139397733 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
8 Hb_005463_060 0.1404147504 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
9 Hb_023732_060 0.150543108 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
10 Hb_004755_030 0.1514913586 - - EG964 [Manihot glaziovii]
11 Hb_003988_040 0.1524259608 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
12 Hb_007885_010 0.156732226 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
13 Hb_001575_030 0.1572238698 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
14 Hb_000181_380 0.1576559088 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
15 Hb_004007_180 0.1584155751 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
16 Hb_000270_720 0.1632710039 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
17 Hb_012251_010 0.1636080067 - - -
18 Hb_000045_250 0.1653606763 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
19 Hb_003057_020 0.1655048616 - - 40S ribosomal protein S23, putative [Ricinus communis]
20 Hb_000997_120 0.1683934726 - - 40S ribosomal protein S15E [Hevea brasiliensis]

Gene co-expression network

sample Hb_001488_400 Hb_001488_400 Hb_021924_010 Hb_021924_010 Hb_001488_400--Hb_021924_010 Hb_000975_180 Hb_000975_180 Hb_001488_400--Hb_000975_180 Hb_003226_220 Hb_003226_220 Hb_001488_400--Hb_003226_220 Hb_000272_050 Hb_000272_050 Hb_001488_400--Hb_000272_050 Hb_000212_210 Hb_000212_210 Hb_001488_400--Hb_000212_210 Hb_124055_010 Hb_124055_010 Hb_001488_400--Hb_124055_010 Hb_021924_010--Hb_000975_180 Hb_023732_060 Hb_023732_060 Hb_021924_010--Hb_023732_060 Hb_004755_030 Hb_004755_030 Hb_021924_010--Hb_004755_030 Hb_021924_010--Hb_003226_220 Hb_003988_040 Hb_003988_040 Hb_021924_010--Hb_003988_040 Hb_000130_100 Hb_000130_100 Hb_000975_180--Hb_000130_100 Hb_000270_720 Hb_000270_720 Hb_000975_180--Hb_000270_720 Hb_000975_180--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_000975_180--Hb_000789_110 Hb_000212_470 Hb_000212_470 Hb_003226_220--Hb_000212_470 Hb_001571_090 Hb_001571_090 Hb_003226_220--Hb_001571_090 Hb_003226_220--Hb_000272_050 Hb_003226_220--Hb_003988_040 Hb_001575_030 Hb_001575_030 Hb_003226_220--Hb_001575_030 Hb_005463_060 Hb_005463_060 Hb_003226_220--Hb_005463_060 Hb_001221_310 Hb_001221_310 Hb_000272_050--Hb_001221_310 Hb_000042_260 Hb_000042_260 Hb_000272_050--Hb_000042_260 Hb_019516_100 Hb_019516_100 Hb_000272_050--Hb_019516_100 Hb_000272_050--Hb_000212_210 Hb_026398_010 Hb_026398_010 Hb_000272_050--Hb_026398_010 Hb_002811_090 Hb_002811_090 Hb_000212_210--Hb_002811_090 Hb_003057_020 Hb_003057_020 Hb_000212_210--Hb_003057_020 Hb_001789_050 Hb_001789_050 Hb_000212_210--Hb_001789_050 Hb_007120_090 Hb_007120_090 Hb_000212_210--Hb_007120_090 Hb_000212_210--Hb_000042_260 Hb_097007_010 Hb_097007_010 Hb_124055_010--Hb_097007_010 Hb_004125_110 Hb_004125_110 Hb_124055_010--Hb_004125_110 Hb_124055_010--Hb_000272_050 Hb_124055_010--Hb_021924_010 Hb_000236_460 Hb_000236_460 Hb_124055_010--Hb_000236_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2443 9.52395 27.3541 84.712 20.3316 58.7899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
126.844 273.312 22.9894 17.4844 7.51751

CAGE analysis