Hb_001635_130

Information

Type -
Description -
Location Contig1635: 148880-154403
Sequence    

Annotation

kegg
ID rcu:RCOM_1485620
description 60S ribosomal protein L28, putative
nr
ID XP_012069027.1
description PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
swissprot
ID Q9M0E2
description 60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1
trembl
ID A0A067L0R7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24807 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l28-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14948: 148927-154547 , PASA_asmbl_14949: 149974-150150
cDNA
(Sanger)
(ID:Location)		 001_B10.ab1: 148927-154546 , 001_I19.ab1: 148927-154494 , 008_H20.ab1: 148930-154506 , 010_J16.ab1: 148927-154505 , 012_N18.ab1: 148927-154503 , 026_L22.ab1: 148927-154501 , 028_E24.ab1: 148927-154546 , 043_A08.ab1: 148930-154506

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_130 0.0 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
2 Hb_027684_020 0.1122010814 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
3 Hb_002900_130 0.1269157961 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
4 Hb_154141_030 0.1298924058 - - PREDICTED: histone H2AX [Populus euphratica]
5 Hb_005054_040 0.1314956739 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
6 Hb_001301_050 0.1345337911 - - -
7 Hb_002631_260 0.1368875705 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
8 Hb_000463_130 0.1417515238 - - unnamed protein product [Coffea canephora]
9 Hb_005306_070 0.1422256802 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
10 Hb_000215_330 0.1491452763 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
11 Hb_003376_190 0.1510712706 - - syntaxin, putative [Ricinus communis]
12 Hb_001410_060 0.1515900281 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
13 Hb_000997_120 0.15236908 - - 40S ribosomal protein S15E [Hevea brasiliensis]
14 Hb_000768_130 0.1545367007 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
15 Hb_001571_110 0.1551574926 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
16 Hb_002838_030 0.1572071212 - - 40S ribosomal protein S25A [Hevea brasiliensis]
17 Hb_007120_090 0.1603765195 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
18 Hb_007894_230 0.1615244717 - - 30S ribosomal protein S14, putative [Ricinus communis]
19 Hb_001754_070 0.1615300964 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
20 Hb_076219_010 0.1626223623 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001635_130 Hb_001635_130 Hb_027684_020 Hb_027684_020 Hb_001635_130--Hb_027684_020 Hb_002900_130 Hb_002900_130 Hb_001635_130--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_001635_130--Hb_154141_030 Hb_005054_040 Hb_005054_040 Hb_001635_130--Hb_005054_040 Hb_001301_050 Hb_001301_050 Hb_001635_130--Hb_001301_050 Hb_002631_260 Hb_002631_260 Hb_001635_130--Hb_002631_260 Hb_001269_490 Hb_001269_490 Hb_027684_020--Hb_001269_490 Hb_000997_120 Hb_000997_120 Hb_027684_020--Hb_000997_120 Hb_002838_030 Hb_002838_030 Hb_027684_020--Hb_002838_030 Hb_004125_110 Hb_004125_110 Hb_027684_020--Hb_004125_110 Hb_000116_040 Hb_000116_040 Hb_027684_020--Hb_000116_040 Hb_007120_090 Hb_007120_090 Hb_027684_020--Hb_007120_090 Hb_002900_130--Hb_154141_030 Hb_000768_130 Hb_000768_130 Hb_002900_130--Hb_000768_130 Hb_007313_080 Hb_007313_080 Hb_002900_130--Hb_007313_080 Hb_003020_330 Hb_003020_330 Hb_002900_130--Hb_003020_330 Hb_000739_140 Hb_000739_140 Hb_002900_130--Hb_000739_140 Hb_154141_030--Hb_000768_130 Hb_154141_030--Hb_003020_330 Hb_154141_030--Hb_007313_080 Hb_002811_090 Hb_002811_090 Hb_154141_030--Hb_002811_090 Hb_154141_030--Hb_002838_030 Hb_008748_020 Hb_008748_020 Hb_005054_040--Hb_008748_020 Hb_005054_040--Hb_154141_030 Hb_005054_040--Hb_002900_130 Hb_005245_070 Hb_005245_070 Hb_005054_040--Hb_005245_070 Hb_006541_020 Hb_006541_020 Hb_005054_040--Hb_006541_020 Hb_003494_050 Hb_003494_050 Hb_001301_050--Hb_003494_050 Hb_006573_020 Hb_006573_020 Hb_001301_050--Hb_006573_020 Hb_024758_010 Hb_024758_010 Hb_001301_050--Hb_024758_010 Hb_023711_010 Hb_023711_010 Hb_001301_050--Hb_023711_010 Hb_000302_280 Hb_000302_280 Hb_001301_050--Hb_000302_280 Hb_000049_050 Hb_000049_050 Hb_002631_260--Hb_000049_050 Hb_138585_040 Hb_138585_040 Hb_002631_260--Hb_138585_040 Hb_002324_010 Hb_002324_010 Hb_002631_260--Hb_002324_010 Hb_000260_790 Hb_000260_790 Hb_002631_260--Hb_000260_790 Hb_001410_060 Hb_001410_060 Hb_002631_260--Hb_001410_060 Hb_003880_040 Hb_003880_040 Hb_002631_260--Hb_003880_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.4215 42.5536 133.108 658.888 62.2822 279.765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
393.847 1119.44 185.653 333.19 145.264

CAGE analysis