Hb_024758_010

Information

Type -
Description -
Location Contig24758: 9333-9967
Sequence    

Annotation

kegg
ID csv:101220586
description uncharacterized LOC101220586
nr
ID XP_012068249.1
description PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
swissprot
ID O64818
description Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1
trembl
ID A0A067KZL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16048 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25746: 9179-10031 , PASA_asmbl_25747: 9226-9961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024758_010 0.0 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
2 Hb_001284_030 0.0964163273 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
3 Hb_000046_350 0.1237977921 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001252_210 0.1240741577 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
5 Hb_001353_010 0.1245548795 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
6 Hb_002878_010 0.1265462216 - - -
7 Hb_001301_050 0.126579774 - - -
8 Hb_000808_190 0.1270373928 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
9 Hb_000574_130 0.1288000094 - - calcineurin-like protein [Hevea brasiliensis]
10 Hb_005269_080 0.1301900377 - - protein with unknown function [Ricinus communis]
11 Hb_001953_090 0.1308120289 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
12 Hb_001638_320 0.1315671496 - - hypothetical protein POPTR_0014s10150g [Populus trichocarpa]
13 Hb_008642_030 0.1326057299 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
14 Hb_005045_070 0.1334967241 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
15 Hb_000072_180 0.1339044418 - - PREDICTED: EVI5-like protein [Jatropha curcas]
16 Hb_002016_120 0.1348993341 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
17 Hb_000016_170 0.1373371791 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011360_070 0.1377080463 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
19 Hb_000042_200 0.1377466632 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
20 Hb_003376_190 0.1377769416 - - syntaxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_024758_010 Hb_024758_010 Hb_001284_030 Hb_001284_030 Hb_024758_010--Hb_001284_030 Hb_000046_350 Hb_000046_350 Hb_024758_010--Hb_000046_350 Hb_001252_210 Hb_001252_210 Hb_024758_010--Hb_001252_210 Hb_001353_010 Hb_001353_010 Hb_024758_010--Hb_001353_010 Hb_002878_010 Hb_002878_010 Hb_024758_010--Hb_002878_010 Hb_001301_050 Hb_001301_050 Hb_024758_010--Hb_001301_050 Hb_001284_030--Hb_000046_350 Hb_002918_290 Hb_002918_290 Hb_001284_030--Hb_002918_290 Hb_000042_200 Hb_000042_200 Hb_001284_030--Hb_000042_200 Hb_033153_060 Hb_033153_060 Hb_001284_030--Hb_033153_060 Hb_068056_030 Hb_068056_030 Hb_001284_030--Hb_068056_030 Hb_161175_010 Hb_161175_010 Hb_001284_030--Hb_161175_010 Hb_000072_180 Hb_000072_180 Hb_000046_350--Hb_000072_180 Hb_004672_010 Hb_004672_010 Hb_000046_350--Hb_004672_010 Hb_001222_080 Hb_001222_080 Hb_000046_350--Hb_001222_080 Hb_148113_010 Hb_148113_010 Hb_000046_350--Hb_148113_010 Hb_006420_100 Hb_006420_100 Hb_000046_350--Hb_006420_100 Hb_002284_230 Hb_002284_230 Hb_001252_210--Hb_002284_230 Hb_000574_130 Hb_000574_130 Hb_001252_210--Hb_000574_130 Hb_003894_080 Hb_003894_080 Hb_001252_210--Hb_003894_080 Hb_001252_210--Hb_000046_350 Hb_000733_080 Hb_000733_080 Hb_001252_210--Hb_000733_080 Hb_019762_020 Hb_019762_020 Hb_001252_210--Hb_019762_020 Hb_045003_010 Hb_045003_010 Hb_001353_010--Hb_045003_010 Hb_001489_110 Hb_001489_110 Hb_001353_010--Hb_001489_110 Hb_000808_190 Hb_000808_190 Hb_001353_010--Hb_000808_190 Hb_002303_060 Hb_002303_060 Hb_001353_010--Hb_002303_060 Hb_000563_200 Hb_000563_200 Hb_001353_010--Hb_000563_200 Hb_025098_010 Hb_025098_010 Hb_001353_010--Hb_025098_010 Hb_001953_090 Hb_001953_090 Hb_002878_010--Hb_001953_090 Hb_000322_140 Hb_000322_140 Hb_002878_010--Hb_000322_140 Hb_004336_050 Hb_004336_050 Hb_002878_010--Hb_004336_050 Hb_004374_140 Hb_004374_140 Hb_002878_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_002878_010--Hb_001461_010 Hb_172706_030 Hb_172706_030 Hb_002878_010--Hb_172706_030 Hb_003494_050 Hb_003494_050 Hb_001301_050--Hb_003494_050 Hb_006573_020 Hb_006573_020 Hb_001301_050--Hb_006573_020 Hb_001635_130 Hb_001635_130 Hb_001301_050--Hb_001635_130 Hb_023711_010 Hb_023711_010 Hb_001301_050--Hb_023711_010 Hb_000302_280 Hb_000302_280 Hb_001301_050--Hb_000302_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.7575 8.23591 13.2415 73.6338 14.6931 50.1337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.6128 112.087 56.2391 31.334 56.4248

CAGE analysis