Hb_001277_060

Information

Type -
Description -
Location Contig1277: 102899-103315
Sequence    

Annotation

kegg
ID rcu:RCOM_0910690
description ADP-ribosylation factor, putative
nr
ID XP_010107737.1
description ADP-ribosylation factor-like protein 5 [Morus notabilis]
swissprot
ID Q55AD9
description ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1
trembl
ID W9S5U2
description ADP-ribosylation factor-like protein 5 OS=Morus notabilis GN=L484_013353 PE=3 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-like protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08465: 97565-103487 , PASA_asmbl_08466: 102678-102880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_060 0.0 - - ADP-ribosylation factor-like protein 5 [Morus notabilis]
2 Hb_009178_050 0.1527008108 - - Elongation factor 1-alpha, putative [Ricinus communis]
3 Hb_078804_010 0.1816559412 - - kinase, putative [Ricinus communis]
4 Hb_000614_310 0.2193355682 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001248_120 0.2369399586 - - conserved hypothetical protein [Ricinus communis]
6 Hb_033153_080 0.2483567129 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
7 Hb_001514_260 0.2526091838 - - -
8 Hb_000577_060 0.2583951412 - - -
9 Hb_000160_050 0.2667688098 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
10 Hb_000753_270 0.2668402779 - - -
11 Hb_094529_020 0.2788124147 - - leucine-rich repeat containing protein, putative [Ricinus communis]
12 Hb_000069_290 0.281875463 - - hypothetical protein POPTR_0014s09500g [Populus trichocarpa]
13 Hb_003540_180 0.2825087325 - - -
14 Hb_007210_010 0.2885334356 - - -
15 Hb_000188_080 0.2900470111 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]
16 Hb_027136_020 0.290566452 - - -
17 Hb_004308_010 0.2943353601 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
18 Hb_000170_180 0.2990454263 - - PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]
19 Hb_003996_030 0.3004690285 - - -
20 Hb_054581_010 0.3032898902 - - Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao]

Gene co-expression network

sample Hb_001277_060 Hb_001277_060 Hb_009178_050 Hb_009178_050 Hb_001277_060--Hb_009178_050 Hb_078804_010 Hb_078804_010 Hb_001277_060--Hb_078804_010 Hb_000614_310 Hb_000614_310 Hb_001277_060--Hb_000614_310 Hb_001248_120 Hb_001248_120 Hb_001277_060--Hb_001248_120 Hb_033153_080 Hb_033153_080 Hb_001277_060--Hb_033153_080 Hb_001514_260 Hb_001514_260 Hb_001277_060--Hb_001514_260 Hb_009178_050--Hb_001248_120 Hb_009178_050--Hb_078804_010 Hb_000179_120 Hb_000179_120 Hb_009178_050--Hb_000179_120 Hb_000345_060 Hb_000345_060 Hb_009178_050--Hb_000345_060 Hb_009178_050--Hb_000614_310 Hb_001633_190 Hb_001633_190 Hb_078804_010--Hb_001633_190 Hb_078804_010--Hb_000614_310 Hb_001864_090 Hb_001864_090 Hb_078804_010--Hb_001864_090 Hb_000946_160 Hb_000946_160 Hb_078804_010--Hb_000946_160 Hb_000753_270 Hb_000753_270 Hb_000614_310--Hb_000753_270 Hb_000069_290 Hb_000069_290 Hb_000614_310--Hb_000069_290 Hb_000577_060 Hb_000577_060 Hb_000614_310--Hb_000577_060 Hb_000170_180 Hb_000170_180 Hb_000614_310--Hb_000170_180 Hb_054581_010 Hb_054581_010 Hb_000614_310--Hb_054581_010 Hb_094529_020 Hb_094529_020 Hb_001248_120--Hb_094529_020 Hb_005529_020 Hb_005529_020 Hb_001248_120--Hb_005529_020 Hb_001195_670 Hb_001195_670 Hb_001248_120--Hb_001195_670 Hb_000160_050 Hb_000160_050 Hb_001248_120--Hb_000160_050 Hb_003411_120 Hb_003411_120 Hb_001248_120--Hb_003411_120 Hb_000450_170 Hb_000450_170 Hb_001248_120--Hb_000450_170 Hb_033153_080--Hb_000160_050 Hb_033153_080--Hb_094529_020 Hb_004947_010 Hb_004947_010 Hb_033153_080--Hb_004947_010 Hb_016875_010 Hb_016875_010 Hb_033153_080--Hb_016875_010 Hb_003540_180 Hb_003540_180 Hb_033153_080--Hb_003540_180 Hb_002367_030 Hb_002367_030 Hb_033153_080--Hb_002367_030 Hb_004308_010 Hb_004308_010 Hb_001514_260--Hb_004308_010 Hb_029508_020 Hb_029508_020 Hb_001514_260--Hb_029508_020 Hb_003333_070 Hb_003333_070 Hb_001514_260--Hb_003333_070 Hb_000541_030 Hb_000541_030 Hb_001514_260--Hb_000541_030 Hb_002309_030 Hb_002309_030 Hb_001514_260--Hb_002309_030 Hb_119808_020 Hb_119808_020 Hb_001514_260--Hb_119808_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.65722 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241967 0.190118 0 0.0833583 0

CAGE analysis