Hb_001514_260

Information

Type -
Description -
Location Contig1514: 255375-255870
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_260 0.0 - - -
2 Hb_004308_010 0.202263281 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
3 Hb_029508_020 0.2072213067 - - -
4 Hb_003333_070 0.2074538064 - - Ent-kaurenoic acid oxidase, putative [Ricinus communis]
5 Hb_000541_030 0.2119504085 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002309_030 0.2212301795 - - Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
7 Hb_119808_020 0.2231709389 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
8 Hb_091537_010 0.22434239 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_010866_020 0.2255758225 - - unnamed protein product [Vitis vinifera]
10 Hb_000347_520 0.2286112364 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
11 Hb_004308_020 0.2306431727 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
12 Hb_000347_210 0.2311808092 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
13 Hb_006469_110 0.2330742386 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
14 Hb_000188_080 0.2335675828 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]
15 Hb_003813_010 0.2412643971 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
16 Hb_001157_210 0.2463760872 - - hypothetical protein CISIN_1g038260mg [Citrus sinensis]
17 Hb_008535_020 0.2473351928 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
18 Hb_001102_310 0.2502403785 - - Protein AFR, putative [Ricinus communis]
19 Hb_001277_060 0.2526091838 - - ADP-ribosylation factor-like protein 5 [Morus notabilis]
20 Hb_012799_080 0.2535549673 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001514_260 Hb_001514_260 Hb_004308_010 Hb_004308_010 Hb_001514_260--Hb_004308_010 Hb_029508_020 Hb_029508_020 Hb_001514_260--Hb_029508_020 Hb_003333_070 Hb_003333_070 Hb_001514_260--Hb_003333_070 Hb_000541_030 Hb_000541_030 Hb_001514_260--Hb_000541_030 Hb_002309_030 Hb_002309_030 Hb_001514_260--Hb_002309_030 Hb_119808_020 Hb_119808_020 Hb_001514_260--Hb_119808_020 Hb_004308_010--Hb_003333_070 Hb_000577_060 Hb_000577_060 Hb_004308_010--Hb_000577_060 Hb_000753_270 Hb_000753_270 Hb_004308_010--Hb_000753_270 Hb_004308_010--Hb_002309_030 Hb_000188_080 Hb_000188_080 Hb_004308_010--Hb_000188_080 Hb_010866_020 Hb_010866_020 Hb_004308_010--Hb_010866_020 Hb_029508_020--Hb_000541_030 Hb_091537_010 Hb_091537_010 Hb_029508_020--Hb_091537_010 Hb_000347_210 Hb_000347_210 Hb_029508_020--Hb_000347_210 Hb_029508_020--Hb_119808_020 Hb_001102_310 Hb_001102_310 Hb_029508_020--Hb_001102_310 Hb_016734_050 Hb_016734_050 Hb_029508_020--Hb_016734_050 Hb_003333_070--Hb_000188_080 Hb_005015_090 Hb_005015_090 Hb_003333_070--Hb_005015_090 Hb_003333_070--Hb_002309_030 Hb_008535_020 Hb_008535_020 Hb_003333_070--Hb_008535_020 Hb_005914_190 Hb_005914_190 Hb_003333_070--Hb_005914_190 Hb_000541_030--Hb_091537_010 Hb_000541_030--Hb_000347_210 Hb_000541_030--Hb_119808_020 Hb_000541_030--Hb_016734_050 Hb_014508_020 Hb_014508_020 Hb_000541_030--Hb_014508_020 Hb_006469_110 Hb_006469_110 Hb_002309_030--Hb_006469_110 Hb_002309_030--Hb_008535_020 Hb_002309_030--Hb_000188_080 Hb_002186_120 Hb_002186_120 Hb_002309_030--Hb_002186_120 Hb_001541_220 Hb_001541_220 Hb_119808_020--Hb_001541_220 Hb_119808_020--Hb_091537_010 Hb_013654_030 Hb_013654_030 Hb_119808_020--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.222269 2.06769 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.216932 0.17041 0 0 0

CAGE analysis