Hb_016734_050

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig16734: 24672-25674
Sequence    

Annotation

kegg
ID rcu:RCOM_0536580
description GATA transcription factor, putative
nr
ID XP_002521591.1
description GATA transcription factor, putative [Ricinus communis]
swissprot
ID Q8LC79
description GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2
trembl
ID B9S6H2
description GATA transcription factor, putative OS=Ricinus communis GN=RCOM_0536580 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15462: 19833-27664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016734_050 0.0 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
2 Hb_015175_060 0.0781814146 - - copper transport protein atox1, putative [Ricinus communis]
3 Hb_000541_030 0.1520244696 - - conserved hypothetical protein [Ricinus communis]
4 Hb_029508_020 0.152715523 - - -
5 Hb_012799_080 0.1573693264 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
6 Hb_056718_010 0.1691477725 - - hypothetical protein JCGZ_11777 [Jatropha curcas]
7 Hb_001246_080 0.1802614424 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
8 Hb_000347_210 0.1835996907 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
9 Hb_013654_030 0.186387342 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
10 Hb_000277_040 0.1878877601 - - -
11 Hb_002186_120 0.1888580413 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
12 Hb_003050_210 0.1896134976 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
13 Hb_018671_010 0.1898798061 - - -
14 Hb_001247_050 0.190817983 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
15 Hb_091537_010 0.1914421038 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_010638_030 0.1917613815 - - oleosin1 [Plukenetia volubilis]
17 Hb_001097_080 0.1918048712 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
18 Hb_000099_110 0.1951676647 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
19 Hb_012545_020 0.1960725129 - - PREDICTED: uncharacterized protein LOC105633903 [Jatropha curcas]
20 Hb_097213_010 0.1968035886 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]

Gene co-expression network

sample Hb_016734_050 Hb_016734_050 Hb_015175_060 Hb_015175_060 Hb_016734_050--Hb_015175_060 Hb_000541_030 Hb_000541_030 Hb_016734_050--Hb_000541_030 Hb_029508_020 Hb_029508_020 Hb_016734_050--Hb_029508_020 Hb_012799_080 Hb_012799_080 Hb_016734_050--Hb_012799_080 Hb_056718_010 Hb_056718_010 Hb_016734_050--Hb_056718_010 Hb_001246_080 Hb_001246_080 Hb_016734_050--Hb_001246_080 Hb_015175_060--Hb_056718_010 Hb_013654_030 Hb_013654_030 Hb_015175_060--Hb_013654_030 Hb_015175_060--Hb_012799_080 Hb_015175_060--Hb_001246_080 Hb_010812_080 Hb_010812_080 Hb_015175_060--Hb_010812_080 Hb_000541_030--Hb_029508_020 Hb_091537_010 Hb_091537_010 Hb_000541_030--Hb_091537_010 Hb_000347_210 Hb_000347_210 Hb_000541_030--Hb_000347_210 Hb_119808_020 Hb_119808_020 Hb_000541_030--Hb_119808_020 Hb_014508_020 Hb_014508_020 Hb_000541_030--Hb_014508_020 Hb_029508_020--Hb_091537_010 Hb_029508_020--Hb_000347_210 Hb_029508_020--Hb_119808_020 Hb_001102_310 Hb_001102_310 Hb_029508_020--Hb_001102_310 Hb_012799_080--Hb_000347_210 Hb_012799_080--Hb_029508_020 Hb_012799_080--Hb_000541_030 Hb_012799_080--Hb_119808_020 Hb_010638_030 Hb_010638_030 Hb_056718_010--Hb_010638_030 Hb_004137_090 Hb_004137_090 Hb_056718_010--Hb_004137_090 Hb_003540_010 Hb_003540_010 Hb_056718_010--Hb_003540_010 Hb_000917_220 Hb_000917_220 Hb_056718_010--Hb_000917_220 Hb_018671_010 Hb_018671_010 Hb_056718_010--Hb_018671_010 Hb_002186_120 Hb_002186_120 Hb_056718_010--Hb_002186_120 Hb_003464_100 Hb_003464_100 Hb_001246_080--Hb_003464_100 Hb_003050_210 Hb_003050_210 Hb_001246_080--Hb_003050_210 Hb_000152_730 Hb_000152_730 Hb_001246_080--Hb_000152_730 Hb_002235_330 Hb_002235_330 Hb_001246_080--Hb_002235_330 Hb_097213_010 Hb_097213_010 Hb_001246_080--Hb_097213_010 Hb_000175_600 Hb_000175_600 Hb_001246_080--Hb_000175_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0272712 0.103892 1.13627 0.0326006 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0588139 0 0 0

CAGE analysis