Hb_010638_030

Information

Type -
Description -
Location Contig10638: 56122-56568
Sequence    

Annotation

kegg
ID rcu:RCOM_0799030
description Oleosin, putative
nr
ID AFR46652.1
description oleosin1 [Plukenetia volubilis]
swissprot
ID Q42980
description Oleosin 16 kDa OS=Oryza sativa subsp. japonica GN=OLE16 PE=2 SV=2
trembl
ID J9S7S3
description Oleosin1 OS=Plukenetia volubilis GN=ole1 PE=2 SV=1
Gene Ontology
ID GO:0012511
description oleosin 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02024: 55969-56557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010638_030 0.0 - - oleosin1 [Plukenetia volubilis]
2 Hb_056718_010 0.0892499855 - - hypothetical protein JCGZ_11777 [Jatropha curcas]
3 Hb_001006_130 0.0943997919 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
4 Hb_000917_220 0.1015898266 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
5 Hb_003540_010 0.1093562436 - - -
6 Hb_174829_030 0.1166353926 - - conserved hypothetical protein [Ricinus communis]
7 Hb_151027_010 0.1191298416 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
8 Hb_166700_010 0.1192959354 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
9 Hb_004137_090 0.1224082252 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
10 Hb_003216_010 0.1247013475 - - glycosyl hydrolase family protein [Populus trichocarpa]
11 Hb_000174_130 0.1252364045 - - flowering locus T-like protein [Fagus crenata]
12 Hb_000203_120 0.1278163844 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008727_090 0.1280020669 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
14 Hb_010080_040 0.1292324082 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006052_080 0.1296233822 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH140-like [Populus euphratica]
16 Hb_000224_020 0.1303386394 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
17 Hb_178968_010 0.1329603244 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
18 Hb_104362_020 0.1339846145 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_008196_010 0.1357069048 - - unnamed protein product [Coffea canephora]
20 Hb_000696_120 0.1360496376 - - PREDICTED: protein FD [Populus euphratica]

Gene co-expression network

sample Hb_010638_030 Hb_010638_030 Hb_056718_010 Hb_056718_010 Hb_010638_030--Hb_056718_010 Hb_001006_130 Hb_001006_130 Hb_010638_030--Hb_001006_130 Hb_000917_220 Hb_000917_220 Hb_010638_030--Hb_000917_220 Hb_003540_010 Hb_003540_010 Hb_010638_030--Hb_003540_010 Hb_174829_030 Hb_174829_030 Hb_010638_030--Hb_174829_030 Hb_151027_010 Hb_151027_010 Hb_010638_030--Hb_151027_010 Hb_004137_090 Hb_004137_090 Hb_056718_010--Hb_004137_090 Hb_056718_010--Hb_003540_010 Hb_056718_010--Hb_000917_220 Hb_018671_010 Hb_018671_010 Hb_056718_010--Hb_018671_010 Hb_002186_120 Hb_002186_120 Hb_056718_010--Hb_002186_120 Hb_166700_010 Hb_166700_010 Hb_001006_130--Hb_166700_010 Hb_001006_130--Hb_151027_010 Hb_000174_130 Hb_000174_130 Hb_001006_130--Hb_000174_130 Hb_104362_020 Hb_104362_020 Hb_001006_130--Hb_104362_020 Hb_001006_130--Hb_000917_220 Hb_001006_130--Hb_174829_030 Hb_000917_220--Hb_003540_010 Hb_000917_220--Hb_174829_030 Hb_003216_010 Hb_003216_010 Hb_000917_220--Hb_003216_010 Hb_178968_010 Hb_178968_010 Hb_000917_220--Hb_178968_010 Hb_000917_220--Hb_151027_010 Hb_000917_220--Hb_004137_090 Hb_003540_010--Hb_003216_010 Hb_003540_010--Hb_178968_010 Hb_003540_010--Hb_174829_030 Hb_003540_010--Hb_004137_090 Hb_000053_150 Hb_000053_150 Hb_003540_010--Hb_000053_150 Hb_000696_120 Hb_000696_120 Hb_174829_030--Hb_000696_120 Hb_174829_030--Hb_003216_010 Hb_174829_030--Hb_151027_010 Hb_010080_040 Hb_010080_040 Hb_174829_030--Hb_010080_040 Hb_001006_080 Hb_001006_080 Hb_174829_030--Hb_001006_080 Hb_151027_010--Hb_104362_020 Hb_151027_010--Hb_000174_130 Hb_179367_010 Hb_179367_010 Hb_151027_010--Hb_179367_010 Hb_151027_010--Hb_166700_010 Hb_004652_040 Hb_004652_040 Hb_151027_010--Hb_004652_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.52992 3.85207 32.2303 0.454579 0.218482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.127577 0 0 0

CAGE analysis