Hb_056718_010

Information

Type -
Description -
Location Contig56718: 2345-2710
Sequence    

Annotation

kegg
ID rcu:RCOM_1466940
description DNA binding protein, putative
nr
ID KDP31401.1
description hypothetical protein JCGZ_11777 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K596
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11777 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056718_010 0.0 - - hypothetical protein JCGZ_11777 [Jatropha curcas]
2 Hb_010638_030 0.0892499855 - - oleosin1 [Plukenetia volubilis]
3 Hb_004137_090 0.1062127347 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
4 Hb_003540_010 0.1077381536 - - -
5 Hb_000917_220 0.1078620273 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
6 Hb_018671_010 0.1103534552 - - -
7 Hb_002186_120 0.1127682609 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
8 Hb_006052_080 0.1135302815 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH140-like [Populus euphratica]
9 Hb_178968_010 0.1146007763 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
10 Hb_000203_120 0.1179843609 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008727_090 0.1202167017 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
12 Hb_000224_050 0.1221302189 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003216_010 0.1251257648 - - glycosyl hydrolase family protein [Populus trichocarpa]
14 Hb_000053_150 0.1272689728 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
15 Hb_000277_040 0.1318674327 - - -
16 Hb_181191_010 0.1324113968 - - kinase, putative [Ricinus communis]
17 Hb_174829_030 0.135379185 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003561_020 0.1381547565 - - gulonolactone oxidase, putative [Ricinus communis]
19 Hb_007290_010 0.1404457494 - - cytochrome P450, putative [Ricinus communis]
20 Hb_005057_020 0.141926973 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]

Gene co-expression network

sample Hb_056718_010 Hb_056718_010 Hb_010638_030 Hb_010638_030 Hb_056718_010--Hb_010638_030 Hb_004137_090 Hb_004137_090 Hb_056718_010--Hb_004137_090 Hb_003540_010 Hb_003540_010 Hb_056718_010--Hb_003540_010 Hb_000917_220 Hb_000917_220 Hb_056718_010--Hb_000917_220 Hb_018671_010 Hb_018671_010 Hb_056718_010--Hb_018671_010 Hb_002186_120 Hb_002186_120 Hb_056718_010--Hb_002186_120 Hb_001006_130 Hb_001006_130 Hb_010638_030--Hb_001006_130 Hb_010638_030--Hb_000917_220 Hb_010638_030--Hb_003540_010 Hb_174829_030 Hb_174829_030 Hb_010638_030--Hb_174829_030 Hb_151027_010 Hb_151027_010 Hb_010638_030--Hb_151027_010 Hb_003561_020 Hb_003561_020 Hb_004137_090--Hb_003561_020 Hb_007290_010 Hb_007290_010 Hb_004137_090--Hb_007290_010 Hb_178968_010 Hb_178968_010 Hb_004137_090--Hb_178968_010 Hb_004137_090--Hb_003540_010 Hb_003216_010 Hb_003216_010 Hb_004137_090--Hb_003216_010 Hb_000053_150 Hb_000053_150 Hb_004137_090--Hb_000053_150 Hb_003540_010--Hb_000917_220 Hb_003540_010--Hb_003216_010 Hb_003540_010--Hb_178968_010 Hb_003540_010--Hb_174829_030 Hb_003540_010--Hb_000053_150 Hb_000917_220--Hb_174829_030 Hb_000917_220--Hb_003216_010 Hb_000917_220--Hb_178968_010 Hb_000917_220--Hb_151027_010 Hb_000917_220--Hb_004137_090 Hb_018671_010--Hb_002186_120 Hb_000277_040 Hb_000277_040 Hb_018671_010--Hb_000277_040 Hb_018671_010--Hb_178968_010 Hb_018671_010--Hb_000053_150 Hb_018671_010--Hb_003540_010 Hb_000224_050 Hb_000224_050 Hb_018671_010--Hb_000224_050 Hb_002186_120--Hb_000277_040 Hb_002186_120--Hb_178968_010 Hb_002186_120--Hb_000053_150 Hb_002186_120--Hb_000224_050 Hb_002186_120--Hb_003540_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.266562 0.42378 3.94806 0.0943979 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis