Hb_001006_130

Information

Type -
Description -
Location Contig1006: 162117-165548
Sequence    

Annotation

kegg
ID vvi:100240845
description transcription factor bHLH111
nr
ID XP_012072425.1
description PREDICTED: transcription factor bHLH111 [Jatropha curcas]
swissprot
ID Q9FYJ6
description Transcription factor bHLH111 OS=Arabidopsis thaliana GN=BHLH111 PE=2 SV=1
trembl
ID A0A067L2D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04857 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh111

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_130 0.0 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
2 Hb_166700_010 0.0687056206 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_151027_010 0.0698593104 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
4 Hb_000174_130 0.0720786679 - - flowering locus T-like protein [Fagus crenata]
5 Hb_104362_020 0.0820701808 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
6 Hb_000917_220 0.0823232297 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
7 Hb_174829_030 0.0838804919 - - conserved hypothetical protein [Ricinus communis]
8 Hb_179367_010 0.0891384395 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_010638_030 0.0943997919 - - oleosin1 [Plukenetia volubilis]
10 Hb_103000_010 0.0944307315 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
11 Hb_003540_010 0.0968964006 - - -
12 Hb_004652_040 0.0985022686 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_002014_120 0.1036734435 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
14 Hb_010261_050 0.1037621448 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000224_020 0.1057794765 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
16 Hb_003337_010 0.1078494211 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003216_010 0.1105785139 - - glycosyl hydrolase family protein [Populus trichocarpa]
18 Hb_010080_040 0.1112470709 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000696_120 0.1112759672 - - PREDICTED: protein FD [Populus euphratica]
20 Hb_001006_080 0.1167375058 - - hypothetical protein JCGZ_04862 [Jatropha curcas]

Gene co-expression network

sample Hb_001006_130 Hb_001006_130 Hb_166700_010 Hb_166700_010 Hb_001006_130--Hb_166700_010 Hb_151027_010 Hb_151027_010 Hb_001006_130--Hb_151027_010 Hb_000174_130 Hb_000174_130 Hb_001006_130--Hb_000174_130 Hb_104362_020 Hb_104362_020 Hb_001006_130--Hb_104362_020 Hb_000917_220 Hb_000917_220 Hb_001006_130--Hb_000917_220 Hb_174829_030 Hb_174829_030 Hb_001006_130--Hb_174829_030 Hb_166700_010--Hb_000174_130 Hb_166700_010--Hb_151027_010 Hb_103000_010 Hb_103000_010 Hb_166700_010--Hb_103000_010 Hb_179367_010 Hb_179367_010 Hb_166700_010--Hb_179367_010 Hb_166700_010--Hb_104362_020 Hb_004652_040 Hb_004652_040 Hb_166700_010--Hb_004652_040 Hb_151027_010--Hb_104362_020 Hb_151027_010--Hb_000174_130 Hb_151027_010--Hb_179367_010 Hb_151027_010--Hb_174829_030 Hb_151027_010--Hb_004652_040 Hb_000174_130--Hb_103000_010 Hb_000174_130--Hb_179367_010 Hb_000174_130--Hb_104362_020 Hb_000174_130--Hb_004652_040 Hb_104362_020--Hb_179367_010 Hb_002014_120 Hb_002014_120 Hb_104362_020--Hb_002014_120 Hb_104362_020--Hb_004652_040 Hb_104362_020--Hb_103000_010 Hb_003540_010 Hb_003540_010 Hb_000917_220--Hb_003540_010 Hb_000917_220--Hb_174829_030 Hb_003216_010 Hb_003216_010 Hb_000917_220--Hb_003216_010 Hb_178968_010 Hb_178968_010 Hb_000917_220--Hb_178968_010 Hb_000917_220--Hb_151027_010 Hb_004137_090 Hb_004137_090 Hb_000917_220--Hb_004137_090 Hb_000696_120 Hb_000696_120 Hb_174829_030--Hb_000696_120 Hb_174829_030--Hb_003216_010 Hb_010080_040 Hb_010080_040 Hb_174829_030--Hb_010080_040 Hb_001006_080 Hb_001006_080 Hb_174829_030--Hb_001006_080 Hb_174829_030--Hb_003540_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.342356 0.312835 2.32011 0 0.0229341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis