Hb_015175_060

Information

Type -
Description -
Location Contig15175: 62694-63047
Sequence    

Annotation

kegg
ID rcu:RCOM_1602020
description copper transport protein atox1, putative
nr
ID XP_002510724.1
description copper transport protein atox1, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9R8T1
description Copper transport protein atox1, putative OS=Ricinus communis GN=RCOM_1602020 PE=4 SV=1
Gene Ontology
ID GO:0046872
description copper transport protein atx1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12902: 62715-63704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015175_060 0.0 - - copper transport protein atox1, putative [Ricinus communis]
2 Hb_016734_050 0.0781814146 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
3 Hb_056718_010 0.1577115816 - - hypothetical protein JCGZ_11777 [Jatropha curcas]
4 Hb_013654_030 0.1658686551 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
5 Hb_012799_080 0.1671668273 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
6 Hb_001246_080 0.1683711771 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
7 Hb_010812_080 0.1750778459 - - PREDICTED: methylesterase 17 [Jatropha curcas]
8 Hb_122079_010 0.1756089343 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
9 Hb_000053_150 0.1759558804 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
10 Hb_000277_040 0.1777207675 - - -
11 Hb_178968_010 0.1811116527 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
12 Hb_097213_010 0.1820178967 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
13 Hb_012545_020 0.1822569851 - - PREDICTED: uncharacterized protein LOC105633903 [Jatropha curcas]
14 Hb_002186_120 0.1828130652 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
15 Hb_010638_030 0.1828708071 - - oleosin1 [Plukenetia volubilis]
16 Hb_018671_010 0.1835637599 - - -
17 Hb_000099_110 0.1845773696 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
18 Hb_004137_090 0.1847731115 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
19 Hb_029508_020 0.1867862942 - - -
20 Hb_000541_030 0.1877239886 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_015175_060 Hb_015175_060 Hb_016734_050 Hb_016734_050 Hb_015175_060--Hb_016734_050 Hb_056718_010 Hb_056718_010 Hb_015175_060--Hb_056718_010 Hb_013654_030 Hb_013654_030 Hb_015175_060--Hb_013654_030 Hb_012799_080 Hb_012799_080 Hb_015175_060--Hb_012799_080 Hb_001246_080 Hb_001246_080 Hb_015175_060--Hb_001246_080 Hb_010812_080 Hb_010812_080 Hb_015175_060--Hb_010812_080 Hb_000541_030 Hb_000541_030 Hb_016734_050--Hb_000541_030 Hb_029508_020 Hb_029508_020 Hb_016734_050--Hb_029508_020 Hb_016734_050--Hb_012799_080 Hb_016734_050--Hb_056718_010 Hb_016734_050--Hb_001246_080 Hb_010638_030 Hb_010638_030 Hb_056718_010--Hb_010638_030 Hb_004137_090 Hb_004137_090 Hb_056718_010--Hb_004137_090 Hb_003540_010 Hb_003540_010 Hb_056718_010--Hb_003540_010 Hb_000917_220 Hb_000917_220 Hb_056718_010--Hb_000917_220 Hb_018671_010 Hb_018671_010 Hb_056718_010--Hb_018671_010 Hb_002186_120 Hb_002186_120 Hb_056718_010--Hb_002186_120 Hb_119808_020 Hb_119808_020 Hb_013654_030--Hb_119808_020 Hb_011476_020 Hb_011476_020 Hb_013654_030--Hb_011476_020 Hb_001541_220 Hb_001541_220 Hb_013654_030--Hb_001541_220 Hb_013654_030--Hb_016734_050 Hb_159327_010 Hb_159327_010 Hb_013654_030--Hb_159327_010 Hb_000347_210 Hb_000347_210 Hb_012799_080--Hb_000347_210 Hb_012799_080--Hb_029508_020 Hb_012799_080--Hb_000541_030 Hb_012799_080--Hb_119808_020 Hb_003464_100 Hb_003464_100 Hb_001246_080--Hb_003464_100 Hb_003050_210 Hb_003050_210 Hb_001246_080--Hb_003050_210 Hb_000152_730 Hb_000152_730 Hb_001246_080--Hb_000152_730 Hb_002235_330 Hb_002235_330 Hb_001246_080--Hb_002235_330 Hb_097213_010 Hb_097213_010 Hb_001246_080--Hb_097213_010 Hb_000175_600 Hb_000175_600 Hb_001246_080--Hb_000175_600 Hb_122079_010 Hb_122079_010 Hb_010812_080--Hb_122079_010 Hb_012545_020 Hb_012545_020 Hb_010812_080--Hb_012545_020 Hb_000053_150 Hb_000053_150 Hb_010812_080--Hb_000053_150 Hb_000277_040 Hb_000277_040 Hb_010812_080--Hb_000277_040 Hb_000099_110 Hb_000099_110 Hb_010812_080--Hb_000099_110 Hb_061335_010 Hb_061335_010 Hb_010812_080--Hb_061335_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.22968 1.57227 9.91779 0.367898 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.35762 0 0 0

CAGE analysis