Hb_011476_020

Information

Type -
Description -
Location Contig11476: 6329-9182
Sequence    

Annotation

kegg
ID pmum:103333008
description glutamate dehydrogenase 2
nr
ID XP_012070104.1
description PREDICTED: glutamate dehydrogenase 2-like [Jatropha curcas]
swissprot
ID Q38946
description Glutamate dehydrogenase 2 OS=Arabidopsis thaliana GN=GDH2 PE=1 SV=1
trembl
ID A0A067KY93
description Glutamate dehydrogenase OS=Jatropha curcas GN=JCGZ_03489 PE=3 SV=1
Gene Ontology
ID GO:0016491
description glutamate dehydrogenase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04456: 7949-8280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011476_020 0.0 - - PREDICTED: glutamate dehydrogenase 2-like [Jatropha curcas]
2 Hb_013654_030 0.1827514052 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
3 Hb_159327_010 0.2426206827 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
4 Hb_001541_220 0.2440305102 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
5 Hb_146902_010 0.2491457992 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000896_070 0.2591532709 - - ammonium transporter, putative [Ricinus communis]
7 Hb_119808_020 0.2798494401 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
8 Hb_067034_020 0.2864495879 - - PREDICTED: iridoid synthase [Jatropha curcas]
9 Hb_000302_350 0.2974865177 - - polygalacturonase, putative [Ricinus communis]
10 Hb_008971_030 0.3016425239 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003813_010 0.3018588384 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
12 Hb_015175_060 0.3034740993 - - copper transport protein atox1, putative [Ricinus communis]
13 Hb_001754_160 0.3034842424 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
14 Hb_011316_140 0.3037491337 - - PREDICTED: uncharacterized protein LOC105129591 [Populus euphratica]
15 Hb_051997_010 0.3155282762 - - -
16 Hb_012799_080 0.3188081893 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
17 Hb_002675_210 0.3192444838 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
18 Hb_001628_060 0.3206566018 - - PREDICTED: beta-galactosidase 13-like isoform X2 [Jatropha curcas]
19 Hb_002228_130 0.3230201912 - - conserved hypothetical protein [Ricinus communis]
20 Hb_016734_050 0.3245273421 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_011476_020 Hb_011476_020 Hb_013654_030 Hb_013654_030 Hb_011476_020--Hb_013654_030 Hb_159327_010 Hb_159327_010 Hb_011476_020--Hb_159327_010 Hb_001541_220 Hb_001541_220 Hb_011476_020--Hb_001541_220 Hb_146902_010 Hb_146902_010 Hb_011476_020--Hb_146902_010 Hb_000896_070 Hb_000896_070 Hb_011476_020--Hb_000896_070 Hb_119808_020 Hb_119808_020 Hb_011476_020--Hb_119808_020 Hb_013654_030--Hb_119808_020 Hb_015175_060 Hb_015175_060 Hb_013654_030--Hb_015175_060 Hb_013654_030--Hb_001541_220 Hb_016734_050 Hb_016734_050 Hb_013654_030--Hb_016734_050 Hb_013654_030--Hb_159327_010 Hb_008971_030 Hb_008971_030 Hb_159327_010--Hb_008971_030 Hb_159327_010--Hb_015175_060 Hb_004308_020 Hb_004308_020 Hb_159327_010--Hb_004308_020 Hb_004785_050 Hb_004785_050 Hb_159327_010--Hb_004785_050 Hb_001541_220--Hb_146902_010 Hb_001541_220--Hb_119808_020 Hb_067034_020 Hb_067034_020 Hb_001541_220--Hb_067034_020 Hb_011316_140 Hb_011316_140 Hb_001541_220--Hb_011316_140 Hb_001541_220--Hb_008971_030 Hb_146902_010--Hb_119808_020 Hb_146902_010--Hb_008971_030 Hb_146902_010--Hb_011316_140 Hb_146902_010--Hb_067034_020 Hb_000284_280 Hb_000284_280 Hb_146902_010--Hb_000284_280 Hb_001754_160 Hb_001754_160 Hb_000896_070--Hb_001754_160 Hb_000347_210 Hb_000347_210 Hb_000896_070--Hb_000347_210 Hb_012799_080 Hb_012799_080 Hb_000896_070--Hb_012799_080 Hb_000896_070--Hb_119808_020 Hb_000935_060 Hb_000935_060 Hb_000896_070--Hb_000935_060 Hb_002936_020 Hb_002936_020 Hb_000896_070--Hb_002936_020 Hb_029508_020 Hb_029508_020 Hb_119808_020--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_119808_020--Hb_000541_030 Hb_091537_010 Hb_091537_010 Hb_119808_020--Hb_091537_010 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.117525 0.317164 0.048761 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0906571 0 0.0182776 0

CAGE analysis