Hb_011316_140

Information

Type -
Description -
Location Contig11316: 98559-101886
Sequence    

Annotation

kegg
ID rcu:RCOM_1498350
description hypothetical protein
nr
ID XP_011030014.1
description PREDICTED: uncharacterized protein LOC105129591 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9R9K1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1498350 PE=4 SV=1
Gene Ontology
ID GO:0016301
description kinase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_140 0.0 - - PREDICTED: uncharacterized protein LOC105129591 [Populus euphratica]
2 Hb_119808_020 0.1790529416 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
3 Hb_001541_220 0.1812791485 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
4 Hb_146902_010 0.2026696465 - - conserved hypothetical protein [Ricinus communis]
5 Hb_013654_030 0.2319403542 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
6 Hb_000281_050 0.2390511613 - - PREDICTED: subtilisin-like protease SBT3.5 isoform X2 [Populus euphratica]
7 Hb_000350_040 0.2398369485 - - -
8 Hb_012675_020 0.2462194185 - - hypothetical protein CISIN_1g018227mg [Citrus sinensis]
9 Hb_029508_020 0.2478193267 - - -
10 Hb_091537_010 0.2555934871 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
11 Hb_008971_030 0.2619609253 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012799_080 0.2631507501 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
13 Hb_000541_030 0.2633614178 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000896_070 0.2666264207 - - ammonium transporter, putative [Ricinus communis]
15 Hb_067034_020 0.2669365684 - - PREDICTED: iridoid synthase [Jatropha curcas]
16 Hb_000347_210 0.2674233743 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
17 Hb_000134_100 0.2691596838 - - PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
18 Hb_053345_010 0.2731101692 - - -
19 Hb_001102_310 0.2742008179 - - Protein AFR, putative [Ricinus communis]
20 Hb_002534_140 0.2745179828 - - hypothetical protein JCGZ_11629 [Jatropha curcas]

Gene co-expression network

sample Hb_011316_140 Hb_011316_140 Hb_119808_020 Hb_119808_020 Hb_011316_140--Hb_119808_020 Hb_001541_220 Hb_001541_220 Hb_011316_140--Hb_001541_220 Hb_146902_010 Hb_146902_010 Hb_011316_140--Hb_146902_010 Hb_013654_030 Hb_013654_030 Hb_011316_140--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_011316_140--Hb_000281_050 Hb_000350_040 Hb_000350_040 Hb_011316_140--Hb_000350_040 Hb_119808_020--Hb_001541_220 Hb_029508_020 Hb_029508_020 Hb_119808_020--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_119808_020--Hb_000541_030 Hb_091537_010 Hb_091537_010 Hb_119808_020--Hb_091537_010 Hb_119808_020--Hb_013654_030 Hb_119808_020--Hb_000281_050 Hb_001541_220--Hb_146902_010 Hb_067034_020 Hb_067034_020 Hb_001541_220--Hb_067034_020 Hb_001541_220--Hb_013654_030 Hb_008971_030 Hb_008971_030 Hb_001541_220--Hb_008971_030 Hb_146902_010--Hb_119808_020 Hb_146902_010--Hb_008971_030 Hb_146902_010--Hb_067034_020 Hb_000284_280 Hb_000284_280 Hb_146902_010--Hb_000284_280 Hb_015175_060 Hb_015175_060 Hb_013654_030--Hb_015175_060 Hb_011476_020 Hb_011476_020 Hb_013654_030--Hb_011476_020 Hb_016734_050 Hb_016734_050 Hb_013654_030--Hb_016734_050 Hb_159327_010 Hb_159327_010 Hb_013654_030--Hb_159327_010 Hb_003914_040 Hb_003914_040 Hb_000281_050--Hb_003914_040 Hb_007040_020 Hb_007040_020 Hb_000281_050--Hb_007040_020 Hb_000295_150 Hb_000295_150 Hb_000281_050--Hb_000295_150 Hb_000125_050 Hb_000125_050 Hb_000281_050--Hb_000125_050 Hb_008686_050 Hb_008686_050 Hb_000281_050--Hb_008686_050 Hb_000494_140 Hb_000494_140 Hb_000281_050--Hb_000494_140 Hb_001085_140 Hb_001085_140 Hb_000350_040--Hb_001085_140 Hb_104362_010 Hb_104362_010 Hb_000350_040--Hb_104362_010 Hb_000347_210 Hb_000347_210 Hb_000350_040--Hb_000347_210 Hb_000251_020 Hb_000251_020 Hb_000350_040--Hb_000251_020 Hb_000896_070 Hb_000896_070 Hb_000350_040--Hb_000896_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0192612 0.0704145 0 0.00603756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0116098 0 0 0

CAGE analysis