Hb_000350_040

Information

Type -
Description -
Location Contig350: 25365-31269
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36469: 27816-27997 , PASA_asmbl_36470: 28216-28542 , PASA_asmbl_36471: 30495-31315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000350_040 0.0 - - -
2 Hb_001085_140 0.2236565894 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011316_140 0.2398369485 - - PREDICTED: uncharacterized protein LOC105129591 [Populus euphratica]
4 Hb_104362_010 0.2456366982 - - hypothetical protein POPTR_0247s002302g, partial [Populus trichocarpa]
5 Hb_000347_210 0.2516501685 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
6 Hb_000251_020 0.2568755001 - - hypothetical protein CISIN_1g028541mg [Citrus sinensis]
7 Hb_000896_070 0.2595667666 - - ammonium transporter, putative [Ricinus communis]
8 Hb_091537_010 0.2735865228 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_002016_030 0.2775290171 - - conserved hypothetical protein [Ricinus communis]
10 Hb_033153_080 0.2779946291 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
11 Hb_001102_310 0.2793646531 - - Protein AFR, putative [Ricinus communis]
12 Hb_000156_150 0.2821855041 - - hypothetical protein JCGZ_04603 [Jatropha curcas]
13 Hb_010367_020 0.2823858346 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
14 Hb_011609_200 0.2849297848 - - PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Populus euphratica]
15 Hb_001428_010 0.2850445907 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
16 Hb_012799_080 0.2850509974 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
17 Hb_094529_020 0.2854103273 - - leucine-rich repeat containing protein, putative [Ricinus communis]
18 Hb_029508_020 0.2864790987 - - -
19 Hb_000244_140 0.2864887616 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
20 Hb_000243_370 0.2872858145 - - hypothetical protein VITISV_010022 [Vitis vinifera]

Gene co-expression network

sample Hb_000350_040 Hb_000350_040 Hb_001085_140 Hb_001085_140 Hb_000350_040--Hb_001085_140 Hb_011316_140 Hb_011316_140 Hb_000350_040--Hb_011316_140 Hb_104362_010 Hb_104362_010 Hb_000350_040--Hb_104362_010 Hb_000347_210 Hb_000347_210 Hb_000350_040--Hb_000347_210 Hb_000251_020 Hb_000251_020 Hb_000350_040--Hb_000251_020 Hb_000896_070 Hb_000896_070 Hb_000350_040--Hb_000896_070 Hb_002367_030 Hb_002367_030 Hb_001085_140--Hb_002367_030 Hb_003540_180 Hb_003540_180 Hb_001085_140--Hb_003540_180 Hb_172921_010 Hb_172921_010 Hb_001085_140--Hb_172921_010 Hb_017400_010 Hb_017400_010 Hb_001085_140--Hb_017400_010 Hb_001102_310 Hb_001102_310 Hb_001085_140--Hb_001102_310 Hb_119808_020 Hb_119808_020 Hb_011316_140--Hb_119808_020 Hb_001541_220 Hb_001541_220 Hb_011316_140--Hb_001541_220 Hb_146902_010 Hb_146902_010 Hb_011316_140--Hb_146902_010 Hb_013654_030 Hb_013654_030 Hb_011316_140--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_011316_140--Hb_000281_050 Hb_001428_010 Hb_001428_010 Hb_104362_010--Hb_001428_010 Hb_011609_200 Hb_011609_200 Hb_104362_010--Hb_011609_200 Hb_000156_150 Hb_000156_150 Hb_104362_010--Hb_000156_150 Hb_003494_100 Hb_003494_100 Hb_104362_010--Hb_003494_100 Hb_034858_010 Hb_034858_010 Hb_104362_010--Hb_034858_010 Hb_004317_020 Hb_004317_020 Hb_104362_010--Hb_004317_020 Hb_029508_020 Hb_029508_020 Hb_000347_210--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_000347_210--Hb_000541_030 Hb_012799_080 Hb_012799_080 Hb_000347_210--Hb_012799_080 Hb_091537_010 Hb_091537_010 Hb_000347_210--Hb_091537_010 Hb_000347_210--Hb_000896_070 Hb_000347_210--Hb_119808_020 Hb_041601_010 Hb_041601_010 Hb_000251_020--Hb_041601_010 Hb_000953_120 Hb_000953_120 Hb_000251_020--Hb_000953_120 Hb_004033_020 Hb_004033_020 Hb_000251_020--Hb_004033_020 Hb_022614_010 Hb_022614_010 Hb_000251_020--Hb_022614_010 Hb_162090_010 Hb_162090_010 Hb_000251_020--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000251_020--Hb_017014_020 Hb_001754_160 Hb_001754_160 Hb_000896_070--Hb_001754_160 Hb_000896_070--Hb_012799_080 Hb_000896_070--Hb_119808_020 Hb_000935_060 Hb_000935_060 Hb_000896_070--Hb_000935_060 Hb_002936_020 Hb_002936_020 Hb_000896_070--Hb_002936_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.205062 3.22889 0 0.448668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.452186 0 0.193035 0

CAGE analysis