Hb_001085_140

Information

Type -
Description -
Location Contig1085: 101216-103011
Sequence    

Annotation

kegg
ID rcu:RCOM_1019150
description hypothetical protein
nr
ID XP_002518079.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FLP6
description Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1
trembl
ID B9RWG0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1019150 PE=4 SV=1
Gene Ontology
ID GO:0044237
description small ubiquitin-related modifier 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002367_030 0.2016925298 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
3 Hb_003540_180 0.2032403715 - - -
4 Hb_172921_010 0.2186185365 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
5 Hb_000350_040 0.2236565894 - - -
6 Hb_017400_010 0.2306110812 - - unnamed protein product [Vitis vinifera]
7 Hb_001102_310 0.2356225965 - - Protein AFR, putative [Ricinus communis]
8 Hb_019818_010 0.2495773413 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
9 Hb_091537_010 0.2536425946 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
10 Hb_000243_370 0.2545538271 - - hypothetical protein VITISV_010022 [Vitis vinifera]
11 Hb_033153_080 0.2634827919 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
12 Hb_012092_070 0.27208688 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
13 Hb_000733_260 0.2844433208 - - hypothetical protein JCGZ_26934 [Jatropha curcas]
14 Hb_094529_020 0.2899138727 - - leucine-rich repeat containing protein, putative [Ricinus communis]
15 Hb_005408_110 0.2910962435 - - purine permease, putative [Ricinus communis]
16 Hb_001153_070 0.2996376312 - - -
17 Hb_029508_020 0.3001929019 - - -
18 Hb_000541_030 0.3039470661 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001628_040 0.3070409404 - - PREDICTED: beta-galactosidase 13-like [Populus euphratica]
20 Hb_000164_200 0.3070640196 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001085_140 Hb_001085_140 Hb_002367_030 Hb_002367_030 Hb_001085_140--Hb_002367_030 Hb_003540_180 Hb_003540_180 Hb_001085_140--Hb_003540_180 Hb_172921_010 Hb_172921_010 Hb_001085_140--Hb_172921_010 Hb_000350_040 Hb_000350_040 Hb_001085_140--Hb_000350_040 Hb_017400_010 Hb_017400_010 Hb_001085_140--Hb_017400_010 Hb_001102_310 Hb_001102_310 Hb_001085_140--Hb_001102_310 Hb_002367_030--Hb_017400_010 Hb_002367_030--Hb_003540_180 Hb_019818_010 Hb_019818_010 Hb_002367_030--Hb_019818_010 Hb_002367_030--Hb_001102_310 Hb_012092_070 Hb_012092_070 Hb_002367_030--Hb_012092_070 Hb_091537_010 Hb_091537_010 Hb_002367_030--Hb_091537_010 Hb_003540_180--Hb_001102_310 Hb_003540_180--Hb_091537_010 Hb_003540_180--Hb_017400_010 Hb_033153_080 Hb_033153_080 Hb_003540_180--Hb_033153_080 Hb_001628_040 Hb_001628_040 Hb_003540_180--Hb_001628_040 Hb_002016_030 Hb_002016_030 Hb_172921_010--Hb_002016_030 Hb_021888_040 Hb_021888_040 Hb_172921_010--Hb_021888_040 Hb_002079_020 Hb_002079_020 Hb_172921_010--Hb_002079_020 Hb_002379_040 Hb_002379_040 Hb_172921_010--Hb_002379_040 Hb_172921_010--Hb_000350_040 Hb_011316_140 Hb_011316_140 Hb_000350_040--Hb_011316_140 Hb_104362_010 Hb_104362_010 Hb_000350_040--Hb_104362_010 Hb_000347_210 Hb_000347_210 Hb_000350_040--Hb_000347_210 Hb_000251_020 Hb_000251_020 Hb_000350_040--Hb_000251_020 Hb_000896_070 Hb_000896_070 Hb_000350_040--Hb_000896_070 Hb_017400_010--Hb_019818_010 Hb_017400_010--Hb_012092_070 Hb_132840_120 Hb_132840_120 Hb_017400_010--Hb_132840_120 Hb_017400_010--Hb_001102_310 Hb_001102_310--Hb_091537_010 Hb_029508_020 Hb_029508_020 Hb_001102_310--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_001102_310--Hb_000541_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.961464 0 0.0934801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.190118 0 0 0

CAGE analysis