Hb_021888_040

Information

Type -
Description -
Location Contig21888: 54311-54955
Sequence    

Annotation

kegg
ID sita:101755537
description zinc finger CCCH domain-containing protein 15 homolog
nr
ID XP_008460489.1
description PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
swissprot
ID -
description -
trembl
ID A0A067GZX1
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0351102mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22562: 54290-62755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021888_040 0.0 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
2 Hb_002379_040 0.1734910272 - - -
3 Hb_011200_010 0.2033409564 - - -
4 Hb_009051_020 0.2158235249 - - Thioredoxin O1 [Morus notabilis]
5 Hb_003551_010 0.2189372708 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
6 Hb_003206_100 0.2190106786 - - -
7 Hb_059978_010 0.2273473899 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
8 Hb_013394_100 0.2275505625 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
9 Hb_099298_010 0.236758602 - - -
10 Hb_002016_030 0.2368262085 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007273_020 0.2533346942 - - PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]
12 Hb_000789_150 0.2602134134 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
13 Hb_000562_060 0.2612954948 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
14 Hb_172921_010 0.2630432754 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
15 Hb_012675_080 0.2640549323 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
16 Hb_022614_010 0.2652178422 - - -
17 Hb_000243_370 0.2656788887 - - hypothetical protein VITISV_010022 [Vitis vinifera]
18 Hb_001864_090 0.2755407758 - - -
19 Hb_006794_010 0.2805227746 - - elicitor-responsive protein [Hevea brasiliensis]
20 Hb_000946_160 0.2816291788 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]

Gene co-expression network

sample Hb_021888_040 Hb_021888_040 Hb_002379_040 Hb_002379_040 Hb_021888_040--Hb_002379_040 Hb_011200_010 Hb_011200_010 Hb_021888_040--Hb_011200_010 Hb_009051_020 Hb_009051_020 Hb_021888_040--Hb_009051_020 Hb_003551_010 Hb_003551_010 Hb_021888_040--Hb_003551_010 Hb_003206_100 Hb_003206_100 Hb_021888_040--Hb_003206_100 Hb_059978_010 Hb_059978_010 Hb_021888_040--Hb_059978_010 Hb_002379_040--Hb_011200_010 Hb_002379_040--Hb_059978_010 Hb_000668_020 Hb_000668_020 Hb_002379_040--Hb_000668_020 Hb_012675_080 Hb_012675_080 Hb_002379_040--Hb_012675_080 Hb_002379_040--Hb_003551_010 Hb_006794_010 Hb_006794_010 Hb_011200_010--Hb_006794_010 Hb_005107_020 Hb_005107_020 Hb_011200_010--Hb_005107_020 Hb_022614_010 Hb_022614_010 Hb_011200_010--Hb_022614_010 Hb_013394_100 Hb_013394_100 Hb_011200_010--Hb_013394_100 Hb_011200_010--Hb_012675_080 Hb_006162_020 Hb_006162_020 Hb_011200_010--Hb_006162_020 Hb_009051_020--Hb_003206_100 Hb_009051_020--Hb_003551_010 Hb_007273_020 Hb_007273_020 Hb_009051_020--Hb_007273_020 Hb_163599_010 Hb_163599_010 Hb_009051_020--Hb_163599_010 Hb_000253_030 Hb_000253_030 Hb_009051_020--Hb_000253_030 Hb_002388_010 Hb_002388_010 Hb_003551_010--Hb_002388_010 Hb_003551_010--Hb_013394_100 Hb_000111_030 Hb_000111_030 Hb_003551_010--Hb_000111_030 Hb_066913_010 Hb_066913_010 Hb_003551_010--Hb_066913_010 Hb_182713_020 Hb_182713_020 Hb_003551_010--Hb_182713_020 Hb_003206_100--Hb_003551_010 Hb_003206_100--Hb_007273_020 Hb_003206_100--Hb_011200_010 Hb_002656_020 Hb_002656_020 Hb_003206_100--Hb_002656_020 Hb_005928_070 Hb_005928_070 Hb_059978_010--Hb_005928_070 Hb_001712_080 Hb_001712_080 Hb_059978_010--Hb_001712_080 Hb_059978_010--Hb_013394_100 Hb_002079_040 Hb_002079_040 Hb_059978_010--Hb_002079_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82418 2.48908 0.426268 68.3331 1.8584 30.673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7087 22.3967 0 0 0

CAGE analysis