Hb_009051_020

Information

Type -
Description -
Location Contig9051: 22617-27327
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010094603.1
description Thioredoxin O1 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9R4T1
description Thioredoxin O1 OS=Morus notabilis GN=L484_009848 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62023: 11404-47856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009051_020 0.0 - - Thioredoxin O1 [Morus notabilis]
2 Hb_003206_100 0.1461773632 - - -
3 Hb_003551_010 0.160836726 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
4 Hb_007273_020 0.19299878 - - PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]
5 Hb_021888_040 0.2158235249 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
6 Hb_163599_010 0.2311107339 - - hypothetical protein RCOM_1579620 [Ricinus communis]
7 Hb_000253_030 0.2401658831 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
8 Hb_002656_020 0.243433914 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
9 Hb_074836_010 0.2450968052 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002228_100 0.2461441008 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_013394_100 0.2529376293 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
12 Hb_066913_010 0.2537323852 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
13 Hb_002388_010 0.2569924671 - - -
14 Hb_011200_010 0.2618113742 - - -
15 Hb_001828_100 0.2718328423 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
16 Hb_155541_010 0.2776164086 - - -
17 Hb_006642_030 0.2794603546 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
18 Hb_118228_010 0.2814318142 - - PREDICTED: pirin-like protein [Jatropha curcas]
19 Hb_108227_010 0.2814841452 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
20 Hb_002025_210 0.282103432 - - -

Gene co-expression network

sample Hb_009051_020 Hb_009051_020 Hb_003206_100 Hb_003206_100 Hb_009051_020--Hb_003206_100 Hb_003551_010 Hb_003551_010 Hb_009051_020--Hb_003551_010 Hb_007273_020 Hb_007273_020 Hb_009051_020--Hb_007273_020 Hb_021888_040 Hb_021888_040 Hb_009051_020--Hb_021888_040 Hb_163599_010 Hb_163599_010 Hb_009051_020--Hb_163599_010 Hb_000253_030 Hb_000253_030 Hb_009051_020--Hb_000253_030 Hb_003206_100--Hb_003551_010 Hb_003206_100--Hb_007273_020 Hb_003206_100--Hb_021888_040 Hb_011200_010 Hb_011200_010 Hb_003206_100--Hb_011200_010 Hb_002656_020 Hb_002656_020 Hb_003206_100--Hb_002656_020 Hb_002388_010 Hb_002388_010 Hb_003551_010--Hb_002388_010 Hb_013394_100 Hb_013394_100 Hb_003551_010--Hb_013394_100 Hb_000111_030 Hb_000111_030 Hb_003551_010--Hb_000111_030 Hb_066913_010 Hb_066913_010 Hb_003551_010--Hb_066913_010 Hb_182713_020 Hb_182713_020 Hb_003551_010--Hb_182713_020 Hb_000292_080 Hb_000292_080 Hb_007273_020--Hb_000292_080 Hb_007273_020--Hb_002656_020 Hb_007273_020--Hb_011200_010 Hb_001517_030 Hb_001517_030 Hb_007273_020--Hb_001517_030 Hb_002379_040 Hb_002379_040 Hb_021888_040--Hb_002379_040 Hb_021888_040--Hb_011200_010 Hb_021888_040--Hb_003551_010 Hb_059978_010 Hb_059978_010 Hb_021888_040--Hb_059978_010 Hb_013492_010 Hb_013492_010 Hb_163599_010--Hb_013492_010 Hb_082407_010 Hb_082407_010 Hb_163599_010--Hb_082407_010 Hb_163599_010--Hb_000253_030 Hb_007333_010 Hb_007333_010 Hb_163599_010--Hb_007333_010 Hb_007545_050 Hb_007545_050 Hb_163599_010--Hb_007545_050 Hb_010068_100 Hb_010068_100 Hb_000253_030--Hb_010068_100 Hb_136765_010 Hb_136765_010 Hb_000253_030--Hb_136765_010 Hb_155541_010 Hb_155541_010 Hb_000253_030--Hb_155541_010 Hb_000253_030--Hb_003551_010 Hb_008667_040 Hb_008667_040 Hb_000253_030--Hb_008667_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.25961 0.241227 0.0967426 1.68205 0.0611462 0.715144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.710726 0.446654 0 0 0

CAGE analysis