Hb_000292_080

Information

Type -
Description -
Location Contig292: 150648-151880
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_680983
description hypothetical protein
nr
ID KDO42102.1
description hypothetical protein CISIN_1g034193mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DSU1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034193mg PE=4 SV=1
Gene Ontology
ID GO:0005773
description vacuolar protein sorting-associated protein 55 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30633: 122482-153448
cDNA
(Sanger)
(ID:Location)		 041_J06.ab1: 122573-153359

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000292_080 0.0 - - hypothetical protein CISIN_1g034193mg [Citrus sinensis]
2 Hb_007273_020 0.17110608 - - PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]
3 Hb_011200_010 0.1783841585 - - -
4 Hb_006794_010 0.2118766217 - - elicitor-responsive protein [Hevea brasiliensis]
5 Hb_002656_020 0.2321017116 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
6 Hb_001517_030 0.2324927822 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012675_080 0.2375739606 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
8 Hb_000034_090 0.2518757738 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
9 Hb_183522_010 0.2550775767 - - Far upstream element-binding protein, putative [Ricinus communis]
10 Hb_002918_190 0.2569103316 - - Uncharacterized protein TCM_029816 [Theobroma cacao]
11 Hb_003656_150 0.2595735017 - - -
12 Hb_005107_020 0.2600252415 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
13 Hb_000261_360 0.2600634011 - - unknown [Lotus japonicus]
14 Hb_006995_010 0.2635798689 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
15 Hb_000789_150 0.2653929278 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
16 Hb_005542_090 0.2672742627 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
17 Hb_108227_010 0.2694645508 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
18 Hb_002379_040 0.2779412804 - - -
19 Hb_003206_100 0.2787162458 - - -
20 Hb_179812_010 0.2792072727 - - TdcA1-ORF1-ORF2 [Daucus carota]

Gene co-expression network

sample Hb_000292_080 Hb_000292_080 Hb_007273_020 Hb_007273_020 Hb_000292_080--Hb_007273_020 Hb_011200_010 Hb_011200_010 Hb_000292_080--Hb_011200_010 Hb_006794_010 Hb_006794_010 Hb_000292_080--Hb_006794_010 Hb_002656_020 Hb_002656_020 Hb_000292_080--Hb_002656_020 Hb_001517_030 Hb_001517_030 Hb_000292_080--Hb_001517_030 Hb_012675_080 Hb_012675_080 Hb_000292_080--Hb_012675_080 Hb_007273_020--Hb_002656_020 Hb_009051_020 Hb_009051_020 Hb_007273_020--Hb_009051_020 Hb_007273_020--Hb_011200_010 Hb_003206_100 Hb_003206_100 Hb_007273_020--Hb_003206_100 Hb_007273_020--Hb_001517_030 Hb_011200_010--Hb_006794_010 Hb_005107_020 Hb_005107_020 Hb_011200_010--Hb_005107_020 Hb_022614_010 Hb_022614_010 Hb_011200_010--Hb_022614_010 Hb_013394_100 Hb_013394_100 Hb_011200_010--Hb_013394_100 Hb_011200_010--Hb_012675_080 Hb_006162_020 Hb_006162_020 Hb_011200_010--Hb_006162_020 Hb_006794_010--Hb_005107_020 Hb_000025_080 Hb_000025_080 Hb_006794_010--Hb_000025_080 Hb_009119_010 Hb_009119_010 Hb_006794_010--Hb_009119_010 Hb_006794_010--Hb_006162_020 Hb_006794_010--Hb_022614_010 Hb_108227_010 Hb_108227_010 Hb_002656_020--Hb_108227_010 Hb_178620_010 Hb_178620_010 Hb_002656_020--Hb_178620_010 Hb_068569_010 Hb_068569_010 Hb_002656_020--Hb_068569_010 Hb_001623_290 Hb_001623_290 Hb_002656_020--Hb_001623_290 Hb_003551_010 Hb_003551_010 Hb_002656_020--Hb_003551_010 Hb_000415_070 Hb_000415_070 Hb_001517_030--Hb_000415_070 Hb_015026_150 Hb_015026_150 Hb_001517_030--Hb_015026_150 Hb_005542_090 Hb_005542_090 Hb_001517_030--Hb_005542_090 Hb_001517_030--Hb_002656_020 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_000086_190 Hb_000086_190 Hb_012675_080--Hb_000086_190 Hb_001396_250 Hb_001396_250 Hb_012675_080--Hb_001396_250 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.420938 0 0 2.40328 0.157051 1.93438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.730133 0.287496 0 0.266499 0

CAGE analysis