Hb_000415_070

Information

Type -
Description -
Location Contig415: 135572-137711
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41093: 135552-136103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000415_070 0.0 - - -
2 Hb_001517_030 0.1773357757 - - conserved hypothetical protein [Ricinus communis]
3 Hb_143800_010 0.2241860318 - - hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa]
4 Hb_005542_090 0.2439794582 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
5 Hb_017462_010 0.2496332116 - - -
6 Hb_015026_150 0.2521939273 - - Nuclease PA3, putative [Ricinus communis]
7 Hb_000136_180 0.2543990534 - - ribosomal protein S28, putative [Ricinus communis]
8 Hb_003925_030 0.2562967125 - - conserved hypothetical protein [Ricinus communis]
9 Hb_116632_010 0.2564566672 - - unnamed protein product [Vitis vinifera]
10 Hb_033385_010 0.262892612 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
11 Hb_000029_100 0.2651180248 - - PREDICTED: nicalin-1-like isoform X2 [Populus euphratica]
12 Hb_000098_300 0.2655492234 - - -
13 Hb_068014_010 0.2693897931 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
14 Hb_007333_040 0.2874465464 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
15 Hb_001195_160 0.2881272211 - - -
16 Hb_019053_010 0.2916941188 - - -
17 Hb_007484_040 0.2917321106 - - -
18 Hb_099878_050 0.2938996298 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
19 Hb_000640_110 0.2960633412 - - -
20 Hb_032258_020 0.2961233182 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]

Gene co-expression network

sample Hb_000415_070 Hb_000415_070 Hb_001517_030 Hb_001517_030 Hb_000415_070--Hb_001517_030 Hb_143800_010 Hb_143800_010 Hb_000415_070--Hb_143800_010 Hb_005542_090 Hb_005542_090 Hb_000415_070--Hb_005542_090 Hb_017462_010 Hb_017462_010 Hb_000415_070--Hb_017462_010 Hb_015026_150 Hb_015026_150 Hb_000415_070--Hb_015026_150 Hb_000136_180 Hb_000136_180 Hb_000415_070--Hb_000136_180 Hb_001517_030--Hb_015026_150 Hb_001517_030--Hb_005542_090 Hb_007273_020 Hb_007273_020 Hb_001517_030--Hb_007273_020 Hb_000292_080 Hb_000292_080 Hb_001517_030--Hb_000292_080 Hb_002656_020 Hb_002656_020 Hb_001517_030--Hb_002656_020 Hb_063480_010 Hb_063480_010 Hb_143800_010--Hb_063480_010 Hb_151939_010 Hb_151939_010 Hb_143800_010--Hb_151939_010 Hb_000640_110 Hb_000640_110 Hb_143800_010--Hb_000640_110 Hb_143800_010--Hb_000136_180 Hb_143800_010--Hb_005542_090 Hb_179812_010 Hb_179812_010 Hb_005542_090--Hb_179812_010 Hb_007083_020 Hb_007083_020 Hb_005542_090--Hb_007083_020 Hb_010504_030 Hb_010504_030 Hb_005542_090--Hb_010504_030 Hb_000261_360 Hb_000261_360 Hb_005542_090--Hb_000261_360 Hb_003581_010 Hb_003581_010 Hb_005542_090--Hb_003581_010 Hb_000007_460 Hb_000007_460 Hb_005542_090--Hb_000007_460 Hb_116632_010 Hb_116632_010 Hb_017462_010--Hb_116632_010 Hb_017462_010--Hb_015026_150 Hb_002784_070 Hb_002784_070 Hb_017462_010--Hb_002784_070 Hb_007188_020 Hb_007188_020 Hb_017462_010--Hb_007188_020 Hb_007484_040 Hb_007484_040 Hb_017462_010--Hb_007484_040 Hb_014834_040 Hb_014834_040 Hb_017462_010--Hb_014834_040 Hb_015026_150--Hb_116632_010 Hb_014050_010 Hb_014050_010 Hb_015026_150--Hb_014050_010 Hb_015026_150--Hb_002784_070 Hb_006065_040 Hb_006065_040 Hb_015026_150--Hb_006065_040 Hb_000136_180--Hb_007188_020 Hb_002687_080 Hb_002687_080 Hb_000136_180--Hb_002687_080 Hb_112047_010 Hb_112047_010 Hb_000136_180--Hb_112047_010 Hb_000015_070 Hb_000015_070 Hb_000136_180--Hb_000015_070 Hb_076875_020 Hb_076875_020 Hb_000136_180--Hb_076875_020 Hb_001623_290 Hb_001623_290 Hb_000136_180--Hb_001623_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.730302 0.300672 0.253452 2.27614 0 3.48405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.34782 0.821404 0 1.89655 0

CAGE analysis