Hb_001517_030

Information

Type -
Description -
Location Contig1517: 14806-15170
Sequence    

Annotation

kegg
ID rcu:RCOM_1494450
description hypothetical protein
nr
ID XP_002516051.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQN2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1494450 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable atp-dependent rna helicase ddx11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001517_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000415_070 0.1773357757 - - -
3 Hb_015026_150 0.2107652343 - - Nuclease PA3, putative [Ricinus communis]
4 Hb_005542_090 0.2216308623 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
5 Hb_007273_020 0.2245900197 - - PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]
6 Hb_000292_080 0.2324927822 - - hypothetical protein CISIN_1g034193mg [Citrus sinensis]
7 Hb_002656_020 0.2513980981 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
8 Hb_116632_010 0.2542686122 - - unnamed protein product [Vitis vinifera]
9 Hb_068014_010 0.2593092361 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
10 Hb_017462_010 0.2653850625 - - -
11 Hb_002784_070 0.2664846987 - - BnaUnng01470D [Brassica napus]
12 Hb_007188_030 0.2675373941 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
13 Hb_012675_080 0.2683351396 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
14 Hb_003656_150 0.2722498938 - - -
15 Hb_177103_010 0.2729187884 - - PREDICTED: histone H2AX [Elaeis guineensis]
16 Hb_001231_070 0.2745165883 - - -
17 Hb_033385_010 0.2749965556 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
18 Hb_010565_040 0.2765216019 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
19 Hb_000261_360 0.27805327 - - unknown [Lotus japonicus]
20 Hb_006995_010 0.278382404 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_001517_030 Hb_001517_030 Hb_000415_070 Hb_000415_070 Hb_001517_030--Hb_000415_070 Hb_015026_150 Hb_015026_150 Hb_001517_030--Hb_015026_150 Hb_005542_090 Hb_005542_090 Hb_001517_030--Hb_005542_090 Hb_007273_020 Hb_007273_020 Hb_001517_030--Hb_007273_020 Hb_000292_080 Hb_000292_080 Hb_001517_030--Hb_000292_080 Hb_002656_020 Hb_002656_020 Hb_001517_030--Hb_002656_020 Hb_143800_010 Hb_143800_010 Hb_000415_070--Hb_143800_010 Hb_000415_070--Hb_005542_090 Hb_017462_010 Hb_017462_010 Hb_000415_070--Hb_017462_010 Hb_000415_070--Hb_015026_150 Hb_000136_180 Hb_000136_180 Hb_000415_070--Hb_000136_180 Hb_015026_150--Hb_017462_010 Hb_116632_010 Hb_116632_010 Hb_015026_150--Hb_116632_010 Hb_014050_010 Hb_014050_010 Hb_015026_150--Hb_014050_010 Hb_002784_070 Hb_002784_070 Hb_015026_150--Hb_002784_070 Hb_006065_040 Hb_006065_040 Hb_015026_150--Hb_006065_040 Hb_179812_010 Hb_179812_010 Hb_005542_090--Hb_179812_010 Hb_007083_020 Hb_007083_020 Hb_005542_090--Hb_007083_020 Hb_010504_030 Hb_010504_030 Hb_005542_090--Hb_010504_030 Hb_000261_360 Hb_000261_360 Hb_005542_090--Hb_000261_360 Hb_003581_010 Hb_003581_010 Hb_005542_090--Hb_003581_010 Hb_000007_460 Hb_000007_460 Hb_005542_090--Hb_000007_460 Hb_007273_020--Hb_000292_080 Hb_007273_020--Hb_002656_020 Hb_009051_020 Hb_009051_020 Hb_007273_020--Hb_009051_020 Hb_011200_010 Hb_011200_010 Hb_007273_020--Hb_011200_010 Hb_003206_100 Hb_003206_100 Hb_007273_020--Hb_003206_100 Hb_000292_080--Hb_011200_010 Hb_006794_010 Hb_006794_010 Hb_000292_080--Hb_006794_010 Hb_000292_080--Hb_002656_020 Hb_012675_080 Hb_012675_080 Hb_000292_080--Hb_012675_080 Hb_108227_010 Hb_108227_010 Hb_002656_020--Hb_108227_010 Hb_178620_010 Hb_178620_010 Hb_002656_020--Hb_178620_010 Hb_068569_010 Hb_068569_010 Hb_002656_020--Hb_068569_010 Hb_001623_290 Hb_001623_290 Hb_002656_020--Hb_001623_290 Hb_003551_010 Hb_003551_010 Hb_002656_020--Hb_003551_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.95236 1.92913 0 14.8907 0 21.508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13915 4.10456 0 6.11503 0

CAGE analysis