Hb_002656_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2656: 47579-50794
Sequence    

Annotation

kegg
ID rcu:RCOM_0455380
description ATP binding protein, putative (EC:3.1.3.16)
nr
ID XP_002529486.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID P0C8S1
description Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=3 SV=1
trembl
ID B9SU17
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0455380 PE=4 SV=1
Gene Ontology
ID GO:0043531
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27747: 47175-47639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002656_020 0.0 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
2 Hb_007273_020 0.1742622762 - - PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]
3 Hb_108227_010 0.1968597023 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
4 Hb_178620_010 0.2105907778 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
5 Hb_068569_010 0.2114660184 - - -
6 Hb_001623_290 0.2129285958 - - unknown [Populus trichocarpa]
7 Hb_003551_010 0.2182318189 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
8 Hb_000053_030 0.2184601845 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
9 Hb_001623_300 0.2194941652 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
10 Hb_005542_090 0.2203669496 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
11 Hb_000015_070 0.223753941 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
12 Hb_095192_010 0.2279033956 - - hypothetical protein VITISV_043980 [Vitis vinifera]
13 Hb_011200_010 0.2289895926 - - -
14 Hb_010964_020 0.2290237774 - - RNA helicase [Arabidopsis thaliana]
15 Hb_183522_010 0.2297984221 - - Far upstream element-binding protein, putative [Ricinus communis]
16 Hb_179812_010 0.2302038715 - - TdcA1-ORF1-ORF2 [Daucus carota]
17 Hb_005129_010 0.2319245737 - - hypothetical protein VITISV_026364 [Vitis vinifera]
18 Hb_000292_080 0.2321017116 - - hypothetical protein CISIN_1g034193mg [Citrus sinensis]
19 Hb_002687_080 0.2321040135 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
20 Hb_000033_070 0.2343492196 - - unnamed protein product [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_002656_020 Hb_002656_020 Hb_007273_020 Hb_007273_020 Hb_002656_020--Hb_007273_020 Hb_108227_010 Hb_108227_010 Hb_002656_020--Hb_108227_010 Hb_178620_010 Hb_178620_010 Hb_002656_020--Hb_178620_010 Hb_068569_010 Hb_068569_010 Hb_002656_020--Hb_068569_010 Hb_001623_290 Hb_001623_290 Hb_002656_020--Hb_001623_290 Hb_003551_010 Hb_003551_010 Hb_002656_020--Hb_003551_010 Hb_000292_080 Hb_000292_080 Hb_007273_020--Hb_000292_080 Hb_009051_020 Hb_009051_020 Hb_007273_020--Hb_009051_020 Hb_011200_010 Hb_011200_010 Hb_007273_020--Hb_011200_010 Hb_003206_100 Hb_003206_100 Hb_007273_020--Hb_003206_100 Hb_001517_030 Hb_001517_030 Hb_007273_020--Hb_001517_030 Hb_000015_070 Hb_000015_070 Hb_108227_010--Hb_000015_070 Hb_003371_170 Hb_003371_170 Hb_108227_010--Hb_003371_170 Hb_001396_250 Hb_001396_250 Hb_108227_010--Hb_001396_250 Hb_012675_080 Hb_012675_080 Hb_108227_010--Hb_012675_080 Hb_000789_150 Hb_000789_150 Hb_108227_010--Hb_000789_150 Hb_013394_100 Hb_013394_100 Hb_108227_010--Hb_013394_100 Hb_010964_020 Hb_010964_020 Hb_178620_010--Hb_010964_020 Hb_178620_010--Hb_068569_010 Hb_025905_020 Hb_025905_020 Hb_178620_010--Hb_025905_020 Hb_002388_010 Hb_002388_010 Hb_178620_010--Hb_002388_010 Hb_013358_100 Hb_013358_100 Hb_178620_010--Hb_013358_100 Hb_002192_090 Hb_002192_090 Hb_178620_010--Hb_002192_090 Hb_068569_010--Hb_013358_100 Hb_068569_010--Hb_010964_020 Hb_000053_030 Hb_000053_030 Hb_068569_010--Hb_000053_030 Hb_065841_010 Hb_065841_010 Hb_068569_010--Hb_065841_010 Hb_033385_010 Hb_033385_010 Hb_068569_010--Hb_033385_010 Hb_001623_300 Hb_001623_300 Hb_001623_290--Hb_001623_300 Hb_000429_250 Hb_000429_250 Hb_001623_290--Hb_000429_250 Hb_112047_010 Hb_112047_010 Hb_001623_290--Hb_112047_010 Hb_001623_290--Hb_010964_020 Hb_006663_090 Hb_006663_090 Hb_001623_290--Hb_006663_090 Hb_002687_080 Hb_002687_080 Hb_001623_290--Hb_002687_080 Hb_003551_010--Hb_002388_010 Hb_003551_010--Hb_009051_020 Hb_003551_010--Hb_013394_100 Hb_000111_030 Hb_000111_030 Hb_003551_010--Hb_000111_030 Hb_066913_010 Hb_066913_010 Hb_003551_010--Hb_066913_010 Hb_182713_020 Hb_182713_020 Hb_003551_010--Hb_182713_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.969862 0.232027 0.193556 2.21455 0.136619 2.36441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.727811 0.540922 0 0.138768 0.113287

CAGE analysis