Hb_007273_020

Information

Type -
Description -
Location Contig7273: 5241-5576
Sequence    

Annotation

kegg
ID cam:101511529
description probable U6 snRNA-associated Sm-like protein LSm4-like
nr
ID XP_004494370.1
description PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]
swissprot
ID Q43582
description Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID S8D212
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_03371 PE=4 SV=1
Gene Ontology
ID GO:0006396
description probable u6 snrna-associated sm-like protein lsm4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007273_020 0.0 - - PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]
2 Hb_000292_080 0.17110608 - - hypothetical protein CISIN_1g034193mg [Citrus sinensis]
3 Hb_002656_020 0.1742622762 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
4 Hb_009051_020 0.19299878 - - Thioredoxin O1 [Morus notabilis]
5 Hb_011200_010 0.2055490167 - - -
6 Hb_003206_100 0.2061253442 - - -
7 Hb_001517_030 0.2245900197 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003551_010 0.2267358517 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
9 Hb_108227_010 0.2410743103 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
10 Hb_012675_080 0.241929877 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
11 Hb_179812_010 0.2497841691 - - TdcA1-ORF1-ORF2 [Daucus carota]
12 Hb_000994_110 0.252501391 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000015_070 0.2529507739 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
14 Hb_013394_100 0.2530453902 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
15 Hb_021888_040 0.2533346942 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
16 Hb_002168_010 0.2572385445 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
17 Hb_000671_120 0.2589873415 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
18 Hb_001396_250 0.2619026995 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
19 Hb_066913_010 0.2636344308 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
20 Hb_007545_050 0.2640081538 - - -

Gene co-expression network

sample Hb_007273_020 Hb_007273_020 Hb_000292_080 Hb_000292_080 Hb_007273_020--Hb_000292_080 Hb_002656_020 Hb_002656_020 Hb_007273_020--Hb_002656_020 Hb_009051_020 Hb_009051_020 Hb_007273_020--Hb_009051_020 Hb_011200_010 Hb_011200_010 Hb_007273_020--Hb_011200_010 Hb_003206_100 Hb_003206_100 Hb_007273_020--Hb_003206_100 Hb_001517_030 Hb_001517_030 Hb_007273_020--Hb_001517_030 Hb_000292_080--Hb_011200_010 Hb_006794_010 Hb_006794_010 Hb_000292_080--Hb_006794_010 Hb_000292_080--Hb_002656_020 Hb_000292_080--Hb_001517_030 Hb_012675_080 Hb_012675_080 Hb_000292_080--Hb_012675_080 Hb_108227_010 Hb_108227_010 Hb_002656_020--Hb_108227_010 Hb_178620_010 Hb_178620_010 Hb_002656_020--Hb_178620_010 Hb_068569_010 Hb_068569_010 Hb_002656_020--Hb_068569_010 Hb_001623_290 Hb_001623_290 Hb_002656_020--Hb_001623_290 Hb_003551_010 Hb_003551_010 Hb_002656_020--Hb_003551_010 Hb_009051_020--Hb_003206_100 Hb_009051_020--Hb_003551_010 Hb_021888_040 Hb_021888_040 Hb_009051_020--Hb_021888_040 Hb_163599_010 Hb_163599_010 Hb_009051_020--Hb_163599_010 Hb_000253_030 Hb_000253_030 Hb_009051_020--Hb_000253_030 Hb_011200_010--Hb_006794_010 Hb_005107_020 Hb_005107_020 Hb_011200_010--Hb_005107_020 Hb_022614_010 Hb_022614_010 Hb_011200_010--Hb_022614_010 Hb_013394_100 Hb_013394_100 Hb_011200_010--Hb_013394_100 Hb_011200_010--Hb_012675_080 Hb_006162_020 Hb_006162_020 Hb_011200_010--Hb_006162_020 Hb_003206_100--Hb_003551_010 Hb_003206_100--Hb_021888_040 Hb_003206_100--Hb_011200_010 Hb_003206_100--Hb_002656_020 Hb_000415_070 Hb_000415_070 Hb_001517_030--Hb_000415_070 Hb_015026_150 Hb_015026_150 Hb_001517_030--Hb_015026_150 Hb_005542_090 Hb_005542_090 Hb_001517_030--Hb_005542_090 Hb_001517_030--Hb_002656_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64241 0.264269 0.202558 6.79575 0.121989 4.82591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.1454 1.79849 0 0.606991 0

CAGE analysis