Hb_015026_150

Information

Type -
Description -
Location Contig15026: 78648-79109
Sequence    

Annotation

kegg
ID rcu:RCOM_1062940
description Nuclease PA3, putative (EC:3.1.30.1)
nr
ID XP_002521425.1
description Nuclease PA3, putative [Ricinus communis]
swissprot
ID F4JJL0
description Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1
trembl
ID B9S606
description Nuclease PA3, putative OS=Ricinus communis GN=RCOM_1062940 PE=4 SV=1
Gene Ontology
ID GO:0003676
description endonuclease 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_150 0.0 - - Nuclease PA3, putative [Ricinus communis]
2 Hb_017462_010 0.1817101013 - - -
3 Hb_116632_010 0.1952739467 - - unnamed protein product [Vitis vinifera]
4 Hb_014050_010 0.2101031369 - - PREDICTED: histone H3.3-like, partial [Phoenix dactylifera]
5 Hb_001517_030 0.2107652343 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002784_070 0.2113530417 - - BnaUnng01470D [Brassica napus]
7 Hb_006065_040 0.2121476261 - - -
8 Hb_001584_320 0.2158949825 - - PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
9 Hb_007188_020 0.224124142 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
10 Hb_001998_140 0.2307937307 - - -
11 Hb_000668_020 0.2311448678 - - -
12 Hb_001396_250 0.2329783502 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
13 Hb_007484_040 0.2343456292 - - -
14 Hb_000086_190 0.2377529805 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
15 Hb_003029_100 0.2413625042 - - -
16 Hb_000136_180 0.2426029673 - - ribosomal protein S28, putative [Ricinus communis]
17 Hb_000015_070 0.2437607196 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
18 Hb_012675_080 0.2446468768 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
19 Hb_010565_040 0.2457362697 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
20 Hb_007534_020 0.2459114114 - - -

Gene co-expression network

sample Hb_015026_150 Hb_015026_150 Hb_017462_010 Hb_017462_010 Hb_015026_150--Hb_017462_010 Hb_116632_010 Hb_116632_010 Hb_015026_150--Hb_116632_010 Hb_014050_010 Hb_014050_010 Hb_015026_150--Hb_014050_010 Hb_001517_030 Hb_001517_030 Hb_015026_150--Hb_001517_030 Hb_002784_070 Hb_002784_070 Hb_015026_150--Hb_002784_070 Hb_006065_040 Hb_006065_040 Hb_015026_150--Hb_006065_040 Hb_017462_010--Hb_116632_010 Hb_017462_010--Hb_002784_070 Hb_007188_020 Hb_007188_020 Hb_017462_010--Hb_007188_020 Hb_007484_040 Hb_007484_040 Hb_017462_010--Hb_007484_040 Hb_014834_040 Hb_014834_040 Hb_017462_010--Hb_014834_040 Hb_116632_010--Hb_007188_020 Hb_068014_010 Hb_068014_010 Hb_116632_010--Hb_068014_010 Hb_003581_010 Hb_003581_010 Hb_116632_010--Hb_003581_010 Hb_005085_030 Hb_005085_030 Hb_116632_010--Hb_005085_030 Hb_000265_130 Hb_000265_130 Hb_116632_010--Hb_000265_130 Hb_001396_250 Hb_001396_250 Hb_014050_010--Hb_001396_250 Hb_000015_070 Hb_000015_070 Hb_014050_010--Hb_000015_070 Hb_010368_030 Hb_010368_030 Hb_014050_010--Hb_010368_030 Hb_002482_060 Hb_002482_060 Hb_014050_010--Hb_002482_060 Hb_000120_190 Hb_000120_190 Hb_014050_010--Hb_000120_190 Hb_000086_190 Hb_000086_190 Hb_014050_010--Hb_000086_190 Hb_000415_070 Hb_000415_070 Hb_001517_030--Hb_000415_070 Hb_005542_090 Hb_005542_090 Hb_001517_030--Hb_005542_090 Hb_007273_020 Hb_007273_020 Hb_001517_030--Hb_007273_020 Hb_000292_080 Hb_000292_080 Hb_001517_030--Hb_000292_080 Hb_002656_020 Hb_002656_020 Hb_001517_030--Hb_002656_020 Hb_011214_100 Hb_011214_100 Hb_002784_070--Hb_011214_100 Hb_002784_070--Hb_005085_030 Hb_002784_070--Hb_001396_250 Hb_002784_070--Hb_000015_070 Hb_166480_010 Hb_166480_010 Hb_002784_070--Hb_166480_010 Hb_002784_070--Hb_007188_020 Hb_007534_020 Hb_007534_020 Hb_006065_040--Hb_007534_020 Hb_000668_020 Hb_000668_020 Hb_006065_040--Hb_000668_020 Hb_001584_320 Hb_001584_320 Hb_006065_040--Hb_001584_320 Hb_006065_040--Hb_000086_190 Hb_003029_100 Hb_003029_100 Hb_006065_040--Hb_003029_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.29693 0.444111 0 2.25354 0 4.50845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.706798 1.9476 0.400379 1.15789 0

CAGE analysis