Hb_003206_100

Information

Type -
Description -
Location Contig3206: 165538-165726
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33877: 165663-165809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003206_100 0.0 - - -
2 Hb_009051_020 0.1461773632 - - Thioredoxin O1 [Morus notabilis]
3 Hb_003551_010 0.1998043281 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
4 Hb_007273_020 0.2061253442 - - PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]
5 Hb_021888_040 0.2190106786 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
6 Hb_011200_010 0.244455256 - - -
7 Hb_002656_020 0.246651732 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
8 Hb_006642_030 0.270429681 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
9 Hb_002379_040 0.2706611322 - - -
10 Hb_001864_090 0.2738688532 - - -
11 Hb_000292_080 0.2787162458 - - hypothetical protein CISIN_1g034193mg [Citrus sinensis]
12 Hb_013394_100 0.2908219373 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
13 Hb_000946_160 0.2942465037 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
14 Hb_000253_030 0.3004390619 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
15 Hb_022614_010 0.3028170129 - - -
16 Hb_003098_010 0.3053359444 - - -
17 Hb_108227_010 0.307494589 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
18 Hb_066913_010 0.3098918326 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
19 Hb_006794_010 0.3099835298 - - elicitor-responsive protein [Hevea brasiliensis]
20 Hb_002388_010 0.3139512891 - - -

Gene co-expression network

sample Hb_003206_100 Hb_003206_100 Hb_009051_020 Hb_009051_020 Hb_003206_100--Hb_009051_020 Hb_003551_010 Hb_003551_010 Hb_003206_100--Hb_003551_010 Hb_007273_020 Hb_007273_020 Hb_003206_100--Hb_007273_020 Hb_021888_040 Hb_021888_040 Hb_003206_100--Hb_021888_040 Hb_011200_010 Hb_011200_010 Hb_003206_100--Hb_011200_010 Hb_002656_020 Hb_002656_020 Hb_003206_100--Hb_002656_020 Hb_009051_020--Hb_003551_010 Hb_009051_020--Hb_007273_020 Hb_009051_020--Hb_021888_040 Hb_163599_010 Hb_163599_010 Hb_009051_020--Hb_163599_010 Hb_000253_030 Hb_000253_030 Hb_009051_020--Hb_000253_030 Hb_002388_010 Hb_002388_010 Hb_003551_010--Hb_002388_010 Hb_013394_100 Hb_013394_100 Hb_003551_010--Hb_013394_100 Hb_000111_030 Hb_000111_030 Hb_003551_010--Hb_000111_030 Hb_066913_010 Hb_066913_010 Hb_003551_010--Hb_066913_010 Hb_182713_020 Hb_182713_020 Hb_003551_010--Hb_182713_020 Hb_000292_080 Hb_000292_080 Hb_007273_020--Hb_000292_080 Hb_007273_020--Hb_002656_020 Hb_007273_020--Hb_011200_010 Hb_001517_030 Hb_001517_030 Hb_007273_020--Hb_001517_030 Hb_002379_040 Hb_002379_040 Hb_021888_040--Hb_002379_040 Hb_021888_040--Hb_011200_010 Hb_021888_040--Hb_003551_010 Hb_059978_010 Hb_059978_010 Hb_021888_040--Hb_059978_010 Hb_006794_010 Hb_006794_010 Hb_011200_010--Hb_006794_010 Hb_005107_020 Hb_005107_020 Hb_011200_010--Hb_005107_020 Hb_022614_010 Hb_022614_010 Hb_011200_010--Hb_022614_010 Hb_011200_010--Hb_013394_100 Hb_012675_080 Hb_012675_080 Hb_011200_010--Hb_012675_080 Hb_006162_020 Hb_006162_020 Hb_011200_010--Hb_006162_020 Hb_108227_010 Hb_108227_010 Hb_002656_020--Hb_108227_010 Hb_178620_010 Hb_178620_010 Hb_002656_020--Hb_178620_010 Hb_068569_010 Hb_068569_010 Hb_002656_020--Hb_068569_010 Hb_001623_290 Hb_001623_290 Hb_002656_020--Hb_001623_290 Hb_002656_020--Hb_003551_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7512 6.9937 0 59.381 1.23694 23.4322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4215 14.1665 0 0 0

CAGE analysis