Hb_002379_040

Information

Type -
Description -
Location Contig2379: 55611-56949
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24979: 56153-61205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002379_040 0.0 - - -
2 Hb_021888_040 0.1734910272 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
3 Hb_011200_010 0.2203766758 - - -
4 Hb_059978_010 0.2312488796 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_000668_020 0.2398264221 - - -
6 Hb_012675_080 0.241612387 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
7 Hb_003551_010 0.2463164471 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
8 Hb_005928_070 0.2490357215 - - hypothetical protein POPTR_0002s04520g [Populus trichocarpa]
9 Hb_013394_100 0.25228088 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
10 Hb_000789_150 0.252397954 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
11 Hb_120052_010 0.2524867152 - - hypothetical protein PRUPE_ppa1027171mg [Prunus persica]
12 Hb_001712_080 0.2526640593 - - -
13 Hb_006794_010 0.2551887004 - - elicitor-responsive protein [Hevea brasiliensis]
14 Hb_006995_010 0.2638196984 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
15 Hb_003077_120 0.2671512228 - - -
16 Hb_000289_080 0.2706581038 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003206_100 0.2706611322 - - -
18 Hb_005542_090 0.2710811412 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
19 Hb_005928_090 0.2719409541 - - PREDICTED: magnesium transporter MRS2-I-like isoform X3 [Jatropha curcas]
20 Hb_007545_050 0.2745712183 - - -

Gene co-expression network

sample Hb_002379_040 Hb_002379_040 Hb_021888_040 Hb_021888_040 Hb_002379_040--Hb_021888_040 Hb_011200_010 Hb_011200_010 Hb_002379_040--Hb_011200_010 Hb_059978_010 Hb_059978_010 Hb_002379_040--Hb_059978_010 Hb_000668_020 Hb_000668_020 Hb_002379_040--Hb_000668_020 Hb_012675_080 Hb_012675_080 Hb_002379_040--Hb_012675_080 Hb_003551_010 Hb_003551_010 Hb_002379_040--Hb_003551_010 Hb_021888_040--Hb_011200_010 Hb_009051_020 Hb_009051_020 Hb_021888_040--Hb_009051_020 Hb_021888_040--Hb_003551_010 Hb_003206_100 Hb_003206_100 Hb_021888_040--Hb_003206_100 Hb_021888_040--Hb_059978_010 Hb_006794_010 Hb_006794_010 Hb_011200_010--Hb_006794_010 Hb_005107_020 Hb_005107_020 Hb_011200_010--Hb_005107_020 Hb_022614_010 Hb_022614_010 Hb_011200_010--Hb_022614_010 Hb_013394_100 Hb_013394_100 Hb_011200_010--Hb_013394_100 Hb_011200_010--Hb_012675_080 Hb_006162_020 Hb_006162_020 Hb_011200_010--Hb_006162_020 Hb_005928_070 Hb_005928_070 Hb_059978_010--Hb_005928_070 Hb_001712_080 Hb_001712_080 Hb_059978_010--Hb_001712_080 Hb_059978_010--Hb_013394_100 Hb_002079_040 Hb_002079_040 Hb_059978_010--Hb_002079_040 Hb_000086_190 Hb_000086_190 Hb_000668_020--Hb_000086_190 Hb_000289_080 Hb_000289_080 Hb_000668_020--Hb_000289_080 Hb_001584_320 Hb_001584_320 Hb_000668_020--Hb_001584_320 Hb_000668_020--Hb_012675_080 Hb_006995_010 Hb_006995_010 Hb_000668_020--Hb_006995_010 Hb_003029_100 Hb_003029_100 Hb_000668_020--Hb_003029_100 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_012675_080--Hb_000086_190 Hb_001396_250 Hb_001396_250 Hb_012675_080--Hb_001396_250 Hb_012675_080--Hb_006995_010 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020 Hb_002388_010 Hb_002388_010 Hb_003551_010--Hb_002388_010 Hb_003551_010--Hb_009051_020 Hb_003551_010--Hb_013394_100 Hb_000111_030 Hb_000111_030 Hb_003551_010--Hb_000111_030 Hb_066913_010 Hb_066913_010 Hb_003551_010--Hb_066913_010 Hb_182713_020 Hb_182713_020 Hb_003551_010--Hb_182713_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.405217 0.281602 0 5.59598 0.563005 5.31332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.610639 2.42141 0 0 0

CAGE analysis