Hb_017400_010

Information

Type -
Description -
Location Contig17400: 731-8088
Sequence    

Annotation

kegg
ID pmum:103324527
description protein TRANSPARENT TESTA 12-like
nr
ID CBI23253.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A022QGF6
description MATE efflux family protein OS=Erythranthe guttata GN=MIMGU_mgv1a004389mg PE=3 SV=1
Gene Ontology
ID GO:0003676
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16588: 7497-7730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017400_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_019818_010 0.0342708626 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
3 Hb_012092_070 0.069874356 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
4 Hb_002367_030 0.0770597531 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
5 Hb_132840_120 0.1466833803 - - Vacuolar protein sorting-associated protein 8 like [Glycine soja]
6 Hb_003540_180 0.1754918514 - - -
7 Hb_001102_310 0.1829846862 - - Protein AFR, putative [Ricinus communis]
8 Hb_001184_140 0.1847332142 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
9 Hb_004728_030 0.206225388 - - hypothetical protein, partial [Lactobacillus brevis]
10 Hb_004947_010 0.2298019668 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
11 Hb_001085_140 0.2306110812 - - conserved hypothetical protein [Ricinus communis]
12 Hb_033153_080 0.2311981924 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
13 Hb_094529_020 0.2329721651 - - leucine-rich repeat containing protein, putative [Ricinus communis]
14 Hb_091537_010 0.2334175483 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
15 Hb_067034_020 0.2689401874 - - PREDICTED: iridoid synthase [Jatropha curcas]
16 Hb_052640_010 0.2822957906 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
17 Hb_008054_060 0.2926626067 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
18 Hb_002686_100 0.2945099715 - - -
19 Hb_001153_070 0.2995284857 - - -
20 Hb_000836_150 0.2998077987 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]

Gene co-expression network

sample Hb_017400_010 Hb_017400_010 Hb_019818_010 Hb_019818_010 Hb_017400_010--Hb_019818_010 Hb_012092_070 Hb_012092_070 Hb_017400_010--Hb_012092_070 Hb_002367_030 Hb_002367_030 Hb_017400_010--Hb_002367_030 Hb_132840_120 Hb_132840_120 Hb_017400_010--Hb_132840_120 Hb_003540_180 Hb_003540_180 Hb_017400_010--Hb_003540_180 Hb_001102_310 Hb_001102_310 Hb_017400_010--Hb_001102_310 Hb_019818_010--Hb_012092_070 Hb_019818_010--Hb_002367_030 Hb_019818_010--Hb_132840_120 Hb_001184_140 Hb_001184_140 Hb_019818_010--Hb_001184_140 Hb_004728_030 Hb_004728_030 Hb_019818_010--Hb_004728_030 Hb_012092_070--Hb_132840_120 Hb_012092_070--Hb_004728_030 Hb_012092_070--Hb_002367_030 Hb_012092_070--Hb_001184_140 Hb_002367_030--Hb_003540_180 Hb_002367_030--Hb_001102_310 Hb_091537_010 Hb_091537_010 Hb_002367_030--Hb_091537_010 Hb_132840_120--Hb_004728_030 Hb_132840_120--Hb_001184_140 Hb_006746_010 Hb_006746_010 Hb_132840_120--Hb_006746_010 Hb_003540_180--Hb_001102_310 Hb_003540_180--Hb_091537_010 Hb_033153_080 Hb_033153_080 Hb_003540_180--Hb_033153_080 Hb_001628_040 Hb_001628_040 Hb_003540_180--Hb_001628_040 Hb_001102_310--Hb_091537_010 Hb_029508_020 Hb_029508_020 Hb_001102_310--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_001102_310--Hb_000541_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0946409 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0378888 0 0 0

CAGE analysis