Hb_001184_140

Information

Type -
Description -
Location Contig1184: 234794-236095
Sequence    

Annotation

kegg
ID pxb:103936904
description alpha-L-fucosidase 2-like
nr
ID KJB47346.1
description hypothetical protein B456_008G022200 [Gossypium raimondii]
swissprot
ID Q8L7W8
description Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=FUC95A PE=1 SV=1
trembl
ID M0XQQ0
description Uncharacterized protein (Fragment) OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0004560
description alpha-l-fucosidase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001184_140 0.0 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
2 Hb_012092_070 0.1620857443 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
3 Hb_132840_120 0.169240125 - - Vacuolar protein sorting-associated protein 8 like [Glycine soja]
4 Hb_019818_010 0.1705628324 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
5 Hb_017400_010 0.1847332142 - - unnamed protein product [Vitis vinifera]
6 Hb_004728_030 0.1962571782 - - hypothetical protein, partial [Lactobacillus brevis]
7 Hb_002367_030 0.2316383335 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
8 Hb_094529_020 0.2713355706 - - leucine-rich repeat containing protein, putative [Ricinus communis]
9 Hb_005097_010 0.2752823564 - - PREDICTED: aluminum-activated malate transporter 7-like isoform X1 [Populus euphratica]
10 Hb_006746_010 0.2819986422 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_004947_010 0.291159655 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
12 Hb_000836_150 0.294809729 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
13 Hb_001102_310 0.2970564925 - - Protein AFR, putative [Ricinus communis]
14 Hb_067034_020 0.303464947 - - PREDICTED: iridoid synthase [Jatropha curcas]
15 Hb_003540_180 0.3078113474 - - -
16 Hb_000172_630 0.3080256857 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_008054_060 0.3127659221 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
18 Hb_002686_100 0.318704931 - - -
19 Hb_001085_140 0.3257088615 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008609_030 0.3258914934 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001184_140 Hb_001184_140 Hb_012092_070 Hb_012092_070 Hb_001184_140--Hb_012092_070 Hb_132840_120 Hb_132840_120 Hb_001184_140--Hb_132840_120 Hb_019818_010 Hb_019818_010 Hb_001184_140--Hb_019818_010 Hb_017400_010 Hb_017400_010 Hb_001184_140--Hb_017400_010 Hb_004728_030 Hb_004728_030 Hb_001184_140--Hb_004728_030 Hb_002367_030 Hb_002367_030 Hb_001184_140--Hb_002367_030 Hb_012092_070--Hb_019818_010 Hb_012092_070--Hb_017400_010 Hb_012092_070--Hb_132840_120 Hb_012092_070--Hb_004728_030 Hb_012092_070--Hb_002367_030 Hb_132840_120--Hb_004728_030 Hb_132840_120--Hb_019818_010 Hb_132840_120--Hb_017400_010 Hb_006746_010 Hb_006746_010 Hb_132840_120--Hb_006746_010 Hb_019818_010--Hb_017400_010 Hb_019818_010--Hb_002367_030 Hb_019818_010--Hb_004728_030 Hb_017400_010--Hb_002367_030 Hb_003540_180 Hb_003540_180 Hb_017400_010--Hb_003540_180 Hb_001102_310 Hb_001102_310 Hb_017400_010--Hb_001102_310 Hb_004728_030--Hb_006746_010 Hb_008609_030 Hb_008609_030 Hb_004728_030--Hb_008609_030 Hb_002367_030--Hb_003540_180 Hb_002367_030--Hb_001102_310 Hb_091537_010 Hb_091537_010 Hb_002367_030--Hb_091537_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.229858 0 2.63664 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.67766 0 0 0

CAGE analysis