Hb_008609_030

Information

Type -
Description -
Location Contig8609: 31032-39935
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044383.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008609_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_006746_010 0.0537292854 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_004728_030 0.1748727689 - - hypothetical protein, partial [Lactobacillus brevis]
4 Hb_132840_120 0.2341937734 - - Vacuolar protein sorting-associated protein 8 like [Glycine soja]
5 Hb_015057_030 0.2485968488 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
6 Hb_029142_080 0.2550198104 - - Ankyrin repeat family protein, putative [Theobroma cacao]
7 Hb_002890_080 0.2688669353 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000836_150 0.2904455195 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
9 Hb_001439_090 0.2908179866 - - conserved hypothetical protein [Ricinus communis]
10 Hb_103739_010 0.2961774514 - - sodium/hydrogen exchanger, putative [Ricinus communis]
11 Hb_001401_100 0.3052899059 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
12 Hb_001892_090 0.3087163878 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012092_070 0.3093767157 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
14 Hb_000152_310 0.3104012904 - - -
15 Hb_000622_320 0.3130249629 - - PREDICTED: chitinase 1-like [Vitis vinifera]
16 Hb_001184_140 0.3258914934 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
17 Hb_000164_060 0.3263951807 - - -
18 Hb_117092_010 0.3305128064 - - acyl-CoA oxidase, putative [Ricinus communis]
19 Hb_003891_090 0.3342325791 - - -
20 Hb_000718_050 0.3434979555 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_008609_030 Hb_008609_030 Hb_006746_010 Hb_006746_010 Hb_008609_030--Hb_006746_010 Hb_004728_030 Hb_004728_030 Hb_008609_030--Hb_004728_030 Hb_132840_120 Hb_132840_120 Hb_008609_030--Hb_132840_120 Hb_015057_030 Hb_015057_030 Hb_008609_030--Hb_015057_030 Hb_029142_080 Hb_029142_080 Hb_008609_030--Hb_029142_080 Hb_002890_080 Hb_002890_080 Hb_008609_030--Hb_002890_080 Hb_006746_010--Hb_004728_030 Hb_006746_010--Hb_132840_120 Hb_012092_070 Hb_012092_070 Hb_006746_010--Hb_012092_070 Hb_000836_150 Hb_000836_150 Hb_006746_010--Hb_000836_150 Hb_006746_010--Hb_029142_080 Hb_004728_030--Hb_132840_120 Hb_004728_030--Hb_012092_070 Hb_019818_010 Hb_019818_010 Hb_004728_030--Hb_019818_010 Hb_001184_140 Hb_001184_140 Hb_004728_030--Hb_001184_140 Hb_132840_120--Hb_012092_070 Hb_132840_120--Hb_019818_010 Hb_017400_010 Hb_017400_010 Hb_132840_120--Hb_017400_010 Hb_132840_120--Hb_001184_140 Hb_001892_090 Hb_001892_090 Hb_015057_030--Hb_001892_090 Hb_006277_070 Hb_006277_070 Hb_015057_030--Hb_006277_070 Hb_000622_070 Hb_000622_070 Hb_015057_030--Hb_000622_070 Hb_051067_010 Hb_051067_010 Hb_015057_030--Hb_051067_010 Hb_015057_030--Hb_002890_080 Hb_000016_070 Hb_000016_070 Hb_015057_030--Hb_000016_070 Hb_000622_320 Hb_000622_320 Hb_029142_080--Hb_000622_320 Hb_029142_080--Hb_015057_030 Hb_024650_040 Hb_024650_040 Hb_029142_080--Hb_024650_040 Hb_029142_080--Hb_002890_080 Hb_001439_090 Hb_001439_090 Hb_002890_080--Hb_001439_090 Hb_002890_080--Hb_024650_040 Hb_006469_120 Hb_006469_120 Hb_002890_080--Hb_006469_120 Hb_002890_070 Hb_002890_070 Hb_002890_080--Hb_002890_070 Hb_002890_080--Hb_051067_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00378701 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00981634 0 0 0

CAGE analysis