Hb_029142_080

Information

Type -
Description -
Location Contig29142: 55832-65248
Sequence    

Annotation

kegg
ID tcc:TCM_001416
description Ankyrin repeat family protein, putative
nr
ID XP_007048310.1
description Ankyrin repeat family protein, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DJE0
description Ankyrin repeat family protein, putative OS=Theobroma cacao GN=TCM_001416 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029142_080 0.0 - - Ankyrin repeat family protein, putative [Theobroma cacao]
2 Hb_000622_320 0.1877467012 - - PREDICTED: chitinase 1-like [Vitis vinifera]
3 Hb_008609_030 0.2550198104 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_015057_030 0.27745154 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
5 Hb_024650_040 0.2800861794 - - PREDICTED: josephin-like protein [Jatropha curcas]
6 Hb_006746_010 0.2803112671 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_002890_080 0.3060576153 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001892_090 0.3182714501 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000164_060 0.3536388481 - - -
10 Hb_051067_010 0.3575074736 - - -
11 Hb_004728_030 0.3580397101 - - hypothetical protein, partial [Lactobacillus brevis]
12 Hb_001439_090 0.3582368599 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008689_020 0.3603368582 - - conserved hypothetical protein [Ricinus communis]
14 Hb_120112_010 0.3622503218 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_001401_100 0.3628459812 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
16 Hb_103739_010 0.3639325964 - - sodium/hydrogen exchanger, putative [Ricinus communis]
17 Hb_000152_310 0.3645561865 - - -
18 Hb_000976_370 0.3646207248 - - beta-glucosidase, putative [Ricinus communis]
19 Hb_000622_070 0.3669555901 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002784_150 0.3690382181 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]

Gene co-expression network

sample Hb_029142_080 Hb_029142_080 Hb_000622_320 Hb_000622_320 Hb_029142_080--Hb_000622_320 Hb_008609_030 Hb_008609_030 Hb_029142_080--Hb_008609_030 Hb_015057_030 Hb_015057_030 Hb_029142_080--Hb_015057_030 Hb_024650_040 Hb_024650_040 Hb_029142_080--Hb_024650_040 Hb_006746_010 Hb_006746_010 Hb_029142_080--Hb_006746_010 Hb_002890_080 Hb_002890_080 Hb_029142_080--Hb_002890_080 Hb_000164_060 Hb_000164_060 Hb_000622_320--Hb_000164_060 Hb_001066_010 Hb_001066_010 Hb_000622_320--Hb_001066_010 Hb_000622_320--Hb_024650_040 Hb_000622_320--Hb_002890_080 Hb_000892_020 Hb_000892_020 Hb_000622_320--Hb_000892_020 Hb_008609_030--Hb_006746_010 Hb_004728_030 Hb_004728_030 Hb_008609_030--Hb_004728_030 Hb_132840_120 Hb_132840_120 Hb_008609_030--Hb_132840_120 Hb_008609_030--Hb_015057_030 Hb_008609_030--Hb_002890_080 Hb_001892_090 Hb_001892_090 Hb_015057_030--Hb_001892_090 Hb_006277_070 Hb_006277_070 Hb_015057_030--Hb_006277_070 Hb_000622_070 Hb_000622_070 Hb_015057_030--Hb_000622_070 Hb_051067_010 Hb_051067_010 Hb_015057_030--Hb_051067_010 Hb_015057_030--Hb_002890_080 Hb_000016_070 Hb_000016_070 Hb_015057_030--Hb_000016_070 Hb_024650_040--Hb_002890_080 Hb_001439_090 Hb_001439_090 Hb_024650_040--Hb_001439_090 Hb_002890_070 Hb_002890_070 Hb_024650_040--Hb_002890_070 Hb_002908_070 Hb_002908_070 Hb_024650_040--Hb_002908_070 Hb_005772_010 Hb_005772_010 Hb_024650_040--Hb_005772_010 Hb_006746_010--Hb_004728_030 Hb_006746_010--Hb_132840_120 Hb_012092_070 Hb_012092_070 Hb_006746_010--Hb_012092_070 Hb_000836_150 Hb_000836_150 Hb_006746_010--Hb_000836_150 Hb_002890_080--Hb_001439_090 Hb_006469_120 Hb_006469_120 Hb_002890_080--Hb_006469_120 Hb_002890_080--Hb_002890_070 Hb_002890_080--Hb_051067_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0102816 0 0 0.0152744 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0735585 0 0 0

CAGE analysis