Hb_002890_070

Information

Type -
Description -
Location Contig2890: 103066-111408
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23750g
description ATP-dependent RNA helicase family protein
nr
ID XP_006385084.1
description ATP-dependent RNA helicase family protein [Populus trichocarpa]
swissprot
ID Q9CZU3
description Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=1 SV=1
trembl
ID B9N0I2
description ATP-dependent RNA helicase family protein OS=Populus trichocarpa GN=POPTR_0004s23750g PE=4 SV=1
Gene Ontology
ID GO:0016818
description superkiller viralicidic activity 2-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30191: 110313-110681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_070 0.0 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
2 Hb_001623_070 0.1979130998 - - cytochrome B5 isoform 1, putative [Ricinus communis]
3 Hb_006277_070 0.2149382125 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012573_010 0.2279818241 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
5 Hb_002890_080 0.2281975084 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003732_040 0.2504600758 - - putative esterase family protein [Populus trichocarpa]
7 Hb_001439_090 0.252362669 - - conserved hypothetical protein [Ricinus communis]
8 Hb_015057_030 0.2538890173 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
9 Hb_002391_330 0.2577184436 - - conserved hypothetical protein [Ricinus communis]
10 Hb_024650_040 0.2629628061 - - PREDICTED: josephin-like protein [Jatropha curcas]
11 Hb_042871_010 0.2692737646 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
12 Hb_001892_090 0.2760372061 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011609_110 0.2761965061 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
14 Hb_103739_010 0.2764838999 - - sodium/hydrogen exchanger, putative [Ricinus communis]
15 Hb_164646_010 0.2765211775 - - PREDICTED: acidic endochitinase-like [Pyrus x bretschneideri]
16 Hb_000363_270 0.2828640643 - - hypothetical protein PRUPE_ppa024846mg [Prunus persica]
17 Hb_001817_140 0.2866631469 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_014497_080 0.287323872 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
19 Hb_000002_170 0.2902350427 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
20 Hb_000622_070 0.2960008863 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002890_070 Hb_002890_070 Hb_001623_070 Hb_001623_070 Hb_002890_070--Hb_001623_070 Hb_006277_070 Hb_006277_070 Hb_002890_070--Hb_006277_070 Hb_012573_010 Hb_012573_010 Hb_002890_070--Hb_012573_010 Hb_002890_080 Hb_002890_080 Hb_002890_070--Hb_002890_080 Hb_003732_040 Hb_003732_040 Hb_002890_070--Hb_003732_040 Hb_001439_090 Hb_001439_090 Hb_002890_070--Hb_001439_090 Hb_003376_380 Hb_003376_380 Hb_001623_070--Hb_003376_380 Hb_003398_020 Hb_003398_020 Hb_001623_070--Hb_003398_020 Hb_001623_070--Hb_001439_090 Hb_011609_110 Hb_011609_110 Hb_001623_070--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_001623_070--Hb_042871_010 Hb_000002_170 Hb_000002_170 Hb_006277_070--Hb_000002_170 Hb_006277_070--Hb_012573_010 Hb_006277_070--Hb_003732_040 Hb_051067_010 Hb_051067_010 Hb_006277_070--Hb_051067_010 Hb_002391_330 Hb_002391_330 Hb_006277_070--Hb_002391_330 Hb_015057_030 Hb_015057_030 Hb_006277_070--Hb_015057_030 Hb_012573_010--Hb_000002_170 Hb_000258_180 Hb_000258_180 Hb_012573_010--Hb_000258_180 Hb_000012_070 Hb_000012_070 Hb_012573_010--Hb_000012_070 Hb_000284_190 Hb_000284_190 Hb_012573_010--Hb_000284_190 Hb_000062_300 Hb_000062_300 Hb_012573_010--Hb_000062_300 Hb_002890_080--Hb_001439_090 Hb_024650_040 Hb_024650_040 Hb_002890_080--Hb_024650_040 Hb_002890_080--Hb_015057_030 Hb_006469_120 Hb_006469_120 Hb_002890_080--Hb_006469_120 Hb_002890_080--Hb_051067_010 Hb_014497_080 Hb_014497_080 Hb_003732_040--Hb_014497_080 Hb_003732_040--Hb_000062_300 Hb_003732_040--Hb_042871_010 Hb_033834_050 Hb_033834_050 Hb_003732_040--Hb_033834_050 Hb_147793_010 Hb_147793_010 Hb_003732_040--Hb_147793_010 Hb_103739_010 Hb_103739_010 Hb_001439_090--Hb_103739_010 Hb_001439_090--Hb_006469_120 Hb_001439_090--Hb_024650_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0187257 0.0299931 0.18432 0.0903628 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.06862 1.48452 0 0.0431462 0

CAGE analysis