Hb_024650_040

Information

Type -
Description -
Location Contig24650: 54660-55049
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12020g
description POPTRDRAFT_576937; hypothetical protein
nr
ID XP_012087900.1
description PREDICTED: josephin-like protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IG63
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s12020g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024650_040 0.0 - - PREDICTED: josephin-like protein [Jatropha curcas]
2 Hb_002890_080 0.1926300662 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001439_090 0.2505064788 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002890_070 0.2629628061 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
5 Hb_002908_070 0.2638128954 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
6 Hb_000622_320 0.2742831474 - - PREDICTED: chitinase 1-like [Vitis vinifera]
7 Hb_005772_010 0.2748920781 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
8 Hb_000622_080 0.277477536 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
9 Hb_029142_080 0.2800861794 - - Ankyrin repeat family protein, putative [Theobroma cacao]
10 Hb_001817_140 0.2845950205 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_015057_030 0.2861807505 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
12 Hb_001102_100 0.2886571699 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
13 Hb_001623_070 0.2909861558 - - cytochrome B5 isoform 1, putative [Ricinus communis]
14 Hb_001016_080 0.3069830179 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
15 Hb_007441_170 0.3071132578 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
16 Hb_042871_010 0.308413993 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
17 Hb_043623_010 0.3095926293 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
18 Hb_003057_020 0.3108652402 - - 40S ribosomal protein S23, putative [Ricinus communis]
19 Hb_051067_010 0.3114752897 - - -
20 Hb_006277_070 0.3118703228 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_024650_040 Hb_024650_040 Hb_002890_080 Hb_002890_080 Hb_024650_040--Hb_002890_080 Hb_001439_090 Hb_001439_090 Hb_024650_040--Hb_001439_090 Hb_002890_070 Hb_002890_070 Hb_024650_040--Hb_002890_070 Hb_002908_070 Hb_002908_070 Hb_024650_040--Hb_002908_070 Hb_000622_320 Hb_000622_320 Hb_024650_040--Hb_000622_320 Hb_005772_010 Hb_005772_010 Hb_024650_040--Hb_005772_010 Hb_002890_080--Hb_001439_090 Hb_015057_030 Hb_015057_030 Hb_002890_080--Hb_015057_030 Hb_006469_120 Hb_006469_120 Hb_002890_080--Hb_006469_120 Hb_002890_080--Hb_002890_070 Hb_051067_010 Hb_051067_010 Hb_002890_080--Hb_051067_010 Hb_001623_070 Hb_001623_070 Hb_001439_090--Hb_001623_070 Hb_103739_010 Hb_103739_010 Hb_001439_090--Hb_103739_010 Hb_001439_090--Hb_006469_120 Hb_001439_090--Hb_002890_070 Hb_002890_070--Hb_001623_070 Hb_006277_070 Hb_006277_070 Hb_002890_070--Hb_006277_070 Hb_012573_010 Hb_012573_010 Hb_002890_070--Hb_012573_010 Hb_003732_040 Hb_003732_040 Hb_002890_070--Hb_003732_040 Hb_043623_010 Hb_043623_010 Hb_002908_070--Hb_043623_010 Hb_000622_080 Hb_000622_080 Hb_002908_070--Hb_000622_080 Hb_000289_070 Hb_000289_070 Hb_002908_070--Hb_000289_070 Hb_001449_100 Hb_001449_100 Hb_002908_070--Hb_001449_100 Hb_001266_030 Hb_001266_030 Hb_002908_070--Hb_001266_030 Hb_009880_010 Hb_009880_010 Hb_002908_070--Hb_009880_010 Hb_029142_080 Hb_029142_080 Hb_000622_320--Hb_029142_080 Hb_000164_060 Hb_000164_060 Hb_000622_320--Hb_000164_060 Hb_001066_010 Hb_001066_010 Hb_000622_320--Hb_001066_010 Hb_000622_320--Hb_002890_080 Hb_000892_020 Hb_000892_020 Hb_000622_320--Hb_000892_020 Hb_004414_040 Hb_004414_040 Hb_005772_010--Hb_004414_040 Hb_000563_310 Hb_000563_310 Hb_005772_010--Hb_000563_310 Hb_002784_140 Hb_002784_140 Hb_005772_010--Hb_002784_140 Hb_001102_100 Hb_001102_100 Hb_005772_010--Hb_001102_100 Hb_005772_010--Hb_002908_070 Hb_000340_440 Hb_000340_440 Hb_005772_010--Hb_000340_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.698892 0 0.561746 1.44223 0.255768 0.273076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20931 9.70048 0 0.283256 0.286443

CAGE analysis