Hb_000622_320

Information

Type -
Description -
Location Contig622: 263907-266439
Sequence    

Annotation

kegg
ID vvi:100246456
description chitinase 1-like
nr
ID XP_002276365.2
description PREDICTED: chitinase 1-like [Vitis vinifera]
swissprot
ID P51614
description Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE=2 SV=1
trembl
ID A0A0D9V825
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0004568
description chitinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_320 0.0 - - PREDICTED: chitinase 1-like [Vitis vinifera]
2 Hb_029142_080 0.1877467012 - - Ankyrin repeat family protein, putative [Theobroma cacao]
3 Hb_000164_060 0.2526898839 - - -
4 Hb_001066_010 0.273358082 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_024650_040 0.2742831474 - - PREDICTED: josephin-like protein [Jatropha curcas]
6 Hb_002890_080 0.2898030585 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000892_020 0.2981391274 - - unnamed protein product [Vitis vinifera]
8 Hb_015057_030 0.3073953558 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
9 Hb_008609_030 0.3130249629 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_015220_010 0.3231113706 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
11 Hb_051067_010 0.3244856117 - - -
12 Hb_000718_050 0.3268436946 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
13 Hb_006746_010 0.3327551944 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_006469_120 0.3350953674 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
15 Hb_006277_070 0.3368028013 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001439_090 0.3419751591 - - conserved hypothetical protein [Ricinus communis]
17 Hb_028271_010 0.3494256242 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
18 Hb_001729_040 0.3498370549 - - hypothetical protein glysoja_049826, partial [Glycine soja]
19 Hb_147793_010 0.3518856506 - - PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Jatropha curcas]
20 Hb_017170_010 0.3556119121 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]

Gene co-expression network

sample Hb_000622_320 Hb_000622_320 Hb_029142_080 Hb_029142_080 Hb_000622_320--Hb_029142_080 Hb_000164_060 Hb_000164_060 Hb_000622_320--Hb_000164_060 Hb_001066_010 Hb_001066_010 Hb_000622_320--Hb_001066_010 Hb_024650_040 Hb_024650_040 Hb_000622_320--Hb_024650_040 Hb_002890_080 Hb_002890_080 Hb_000622_320--Hb_002890_080 Hb_000892_020 Hb_000892_020 Hb_000622_320--Hb_000892_020 Hb_008609_030 Hb_008609_030 Hb_029142_080--Hb_008609_030 Hb_015057_030 Hb_015057_030 Hb_029142_080--Hb_015057_030 Hb_029142_080--Hb_024650_040 Hb_006746_010 Hb_006746_010 Hb_029142_080--Hb_006746_010 Hb_029142_080--Hb_002890_080 Hb_147793_010 Hb_147793_010 Hb_000164_060--Hb_147793_010 Hb_000111_020 Hb_000111_020 Hb_000164_060--Hb_000111_020 Hb_185736_010 Hb_185736_010 Hb_000164_060--Hb_185736_010 Hb_001627_030 Hb_001627_030 Hb_000164_060--Hb_001627_030 Hb_007273_010 Hb_007273_010 Hb_000164_060--Hb_007273_010 Hb_187134_010 Hb_187134_010 Hb_000164_060--Hb_187134_010 Hb_017214_050 Hb_017214_050 Hb_001066_010--Hb_017214_050 Hb_002027_370 Hb_002027_370 Hb_001066_010--Hb_002027_370 Hb_074683_010 Hb_074683_010 Hb_001066_010--Hb_074683_010 Hb_015836_010 Hb_015836_010 Hb_001066_010--Hb_015836_010 Hb_001994_010 Hb_001994_010 Hb_001066_010--Hb_001994_010 Hb_024650_040--Hb_002890_080 Hb_001439_090 Hb_001439_090 Hb_024650_040--Hb_001439_090 Hb_002890_070 Hb_002890_070 Hb_024650_040--Hb_002890_070 Hb_002908_070 Hb_002908_070 Hb_024650_040--Hb_002908_070 Hb_005772_010 Hb_005772_010 Hb_024650_040--Hb_005772_010 Hb_002890_080--Hb_001439_090 Hb_002890_080--Hb_015057_030 Hb_006469_120 Hb_006469_120 Hb_002890_080--Hb_006469_120 Hb_002890_080--Hb_002890_070 Hb_051067_010 Hb_051067_010 Hb_002890_080--Hb_051067_010 Hb_000718_050 Hb_000718_050 Hb_000892_020--Hb_000718_050 Hb_185111_010 Hb_185111_010 Hb_000892_020--Hb_185111_010 Hb_000318_090 Hb_000318_090 Hb_000892_020--Hb_000318_090 Hb_001729_040 Hb_001729_040 Hb_000892_020--Hb_001729_040 Hb_112440_010 Hb_112440_010 Hb_000892_020--Hb_112440_010 Hb_015220_010 Hb_015220_010 Hb_000892_020--Hb_015220_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0124571 0 0 0.0188533 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0892383 0 0.00889533 0

CAGE analysis