Hb_006469_120

Information

Type -
Description -
Location Contig6469: 138452-138691
Sequence    

Annotation

kegg
ID pop:POPTR_0005s16430g
description POPTRDRAFT_651341; hypothetical protein
nr
ID XP_002307402.1
description hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H777
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16430g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006469_120 0.0 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
2 Hb_002890_080 0.2232557331 - - conserved hypothetical protein [Ricinus communis]
3 Hb_014497_080 0.2371373192 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
4 Hb_001439_090 0.2429033814 - - conserved hypothetical protein [Ricinus communis]
5 Hb_051067_010 0.248355443 - - -
6 Hb_000062_300 0.2551193861 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
7 Hb_003732_040 0.2584867995 - - putative esterase family protein [Populus trichocarpa]
8 Hb_000164_060 0.2678966255 - - -
9 Hb_042871_010 0.2870821282 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
10 Hb_000622_080 0.29415138 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
11 Hb_006277_070 0.2944720442 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005321_010 0.2948947884 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
13 Hb_001016_080 0.3058449317 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
14 Hb_000892_020 0.3080089501 - - unnamed protein product [Vitis vinifera]
15 Hb_033834_050 0.3114237031 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003398_020 0.3130587681 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
17 Hb_147793_010 0.3140773195 - - PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Jatropha curcas]
18 Hb_024650_040 0.3178544572 - - PREDICTED: josephin-like protein [Jatropha curcas]
19 Hb_002784_100 0.3181802924 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
20 Hb_002217_460 0.3188497023 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]

Gene co-expression network

sample Hb_006469_120 Hb_006469_120 Hb_002890_080 Hb_002890_080 Hb_006469_120--Hb_002890_080 Hb_014497_080 Hb_014497_080 Hb_006469_120--Hb_014497_080 Hb_001439_090 Hb_001439_090 Hb_006469_120--Hb_001439_090 Hb_051067_010 Hb_051067_010 Hb_006469_120--Hb_051067_010 Hb_000062_300 Hb_000062_300 Hb_006469_120--Hb_000062_300 Hb_003732_040 Hb_003732_040 Hb_006469_120--Hb_003732_040 Hb_002890_080--Hb_001439_090 Hb_024650_040 Hb_024650_040 Hb_002890_080--Hb_024650_040 Hb_015057_030 Hb_015057_030 Hb_002890_080--Hb_015057_030 Hb_002890_070 Hb_002890_070 Hb_002890_080--Hb_002890_070 Hb_002890_080--Hb_051067_010 Hb_014497_080--Hb_000062_300 Hb_014497_080--Hb_003732_040 Hb_033834_050 Hb_033834_050 Hb_014497_080--Hb_033834_050 Hb_042871_010 Hb_042871_010 Hb_014497_080--Hb_042871_010 Hb_003398_020 Hb_003398_020 Hb_014497_080--Hb_003398_020 Hb_086692_020 Hb_086692_020 Hb_014497_080--Hb_086692_020 Hb_001623_070 Hb_001623_070 Hb_001439_090--Hb_001623_070 Hb_103739_010 Hb_103739_010 Hb_001439_090--Hb_103739_010 Hb_001439_090--Hb_024650_040 Hb_001439_090--Hb_002890_070 Hb_006277_070 Hb_006277_070 Hb_051067_010--Hb_006277_070 Hb_147793_010 Hb_147793_010 Hb_051067_010--Hb_147793_010 Hb_051067_010--Hb_015057_030 Hb_023661_060 Hb_023661_060 Hb_051067_010--Hb_023661_060 Hb_000002_170 Hb_000002_170 Hb_051067_010--Hb_000002_170 Hb_034661_020 Hb_034661_020 Hb_051067_010--Hb_034661_020 Hb_000062_300--Hb_003732_040 Hb_000062_300--Hb_042871_010 Hb_000012_070 Hb_000012_070 Hb_000062_300--Hb_000012_070 Hb_000062_300--Hb_033834_050 Hb_003891_080 Hb_003891_080 Hb_000062_300--Hb_003891_080 Hb_003732_040--Hb_006277_070 Hb_003732_040--Hb_042871_010 Hb_003732_040--Hb_033834_050 Hb_003732_040--Hb_147793_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.368507 1.81626 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 9.67747 0.703538 1.33835 0.74971

CAGE analysis