Hb_006746_010

Information

Type -
Description -
Location Contig6746: 8332-10489
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006746_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_008609_030 0.0537292854 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_004728_030 0.1216046061 - - hypothetical protein, partial [Lactobacillus brevis]
4 Hb_132840_120 0.1813441544 - - Vacuolar protein sorting-associated protein 8 like [Glycine soja]
5 Hb_012092_070 0.2572211568 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
6 Hb_000836_150 0.2618509602 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
7 Hb_029142_080 0.2803112671 - - Ankyrin repeat family protein, putative [Theobroma cacao]
8 Hb_001184_140 0.2819986422 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
9 Hb_019818_010 0.2919137652 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
10 Hb_002890_080 0.2956842151 - - conserved hypothetical protein [Ricinus communis]
11 Hb_015057_030 0.2964918761 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
12 Hb_001439_090 0.3025800225 - - conserved hypothetical protein [Ricinus communis]
13 Hb_103739_010 0.3114650902 - - sodium/hydrogen exchanger, putative [Ricinus communis]
14 Hb_001401_100 0.3247979933 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
15 Hb_017400_010 0.3249980769 - - unnamed protein product [Vitis vinifera]
16 Hb_000152_310 0.3308776438 - - -
17 Hb_000622_320 0.3327551944 - - PREDICTED: chitinase 1-like [Vitis vinifera]
18 Hb_112440_010 0.3331847974 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
19 Hb_000718_050 0.3334875026 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
20 Hb_003891_090 0.3382751689 - - -

Gene co-expression network

sample Hb_006746_010 Hb_006746_010 Hb_008609_030 Hb_008609_030 Hb_006746_010--Hb_008609_030 Hb_004728_030 Hb_004728_030 Hb_006746_010--Hb_004728_030 Hb_132840_120 Hb_132840_120 Hb_006746_010--Hb_132840_120 Hb_012092_070 Hb_012092_070 Hb_006746_010--Hb_012092_070 Hb_000836_150 Hb_000836_150 Hb_006746_010--Hb_000836_150 Hb_029142_080 Hb_029142_080 Hb_006746_010--Hb_029142_080 Hb_008609_030--Hb_004728_030 Hb_008609_030--Hb_132840_120 Hb_015057_030 Hb_015057_030 Hb_008609_030--Hb_015057_030 Hb_008609_030--Hb_029142_080 Hb_002890_080 Hb_002890_080 Hb_008609_030--Hb_002890_080 Hb_004728_030--Hb_132840_120 Hb_004728_030--Hb_012092_070 Hb_019818_010 Hb_019818_010 Hb_004728_030--Hb_019818_010 Hb_001184_140 Hb_001184_140 Hb_004728_030--Hb_001184_140 Hb_132840_120--Hb_012092_070 Hb_132840_120--Hb_019818_010 Hb_017400_010 Hb_017400_010 Hb_132840_120--Hb_017400_010 Hb_132840_120--Hb_001184_140 Hb_012092_070--Hb_019818_010 Hb_012092_070--Hb_017400_010 Hb_002367_030 Hb_002367_030 Hb_012092_070--Hb_002367_030 Hb_012092_070--Hb_001184_140 Hb_067034_020 Hb_067034_020 Hb_000836_150--Hb_067034_020 Hb_001437_160 Hb_001437_160 Hb_000836_150--Hb_001437_160 Hb_000836_150--Hb_004728_030 Hb_000836_150--Hb_132840_120 Hb_000740_020 Hb_000740_020 Hb_000836_150--Hb_000740_020 Hb_000836_150--Hb_012092_070 Hb_000622_320 Hb_000622_320 Hb_029142_080--Hb_000622_320 Hb_029142_080--Hb_015057_030 Hb_024650_040 Hb_024650_040 Hb_029142_080--Hb_024650_040 Hb_029142_080--Hb_002890_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0259939 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0511981 0 0 0

CAGE analysis