Hb_000740_020

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig740: 17709-18365
Sequence    

Annotation

kegg
ID rcu:RCOM_0283740
description asymmetric leaves1 and rough sheath, putative
nr
ID XP_002533297.1
description asymmetric leaves1 and rough sheath, putative [Ricinus communis]
swissprot
ID O80931
description Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1
trembl
ID B9T4X8
description Asymmetric leaves1 and rough sheath, putative OS=Ricinus communis GN=RCOM_0283740 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor as1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000740_020 0.0 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
2 Hb_107429_010 0.1036764958 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
3 Hb_001437_160 0.1306631021 - - PREDICTED: high-affinity nitrate transporter 2.1-like [Jatropha curcas]
4 Hb_001226_010 0.2151866136 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
5 Hb_000836_150 0.2431606922 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
6 Hb_001143_150 0.259575831 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]
7 Hb_000917_170 0.2597022728 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
8 Hb_067034_020 0.259982524 - - PREDICTED: iridoid synthase [Jatropha curcas]
9 Hb_146902_010 0.2752949577 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000111_440 0.2779259434 - - -
11 Hb_000175_150 0.27827599 desease resistance Gene Name: NB-ARC hypothetical protein B456_009G311700 [Gossypium raimondii]
12 Hb_011344_060 0.2809034699 - - PREDICTED: uncharacterized protein LOC105645975 isoform X2 [Jatropha curcas]
13 Hb_011457_030 0.2903983573 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
14 Hb_004163_020 0.2956736691 - - -
15 Hb_001541_220 0.3061500482 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
16 Hb_034904_010 0.3084505511 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
17 Hb_007432_010 0.3120752832 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
18 Hb_000302_350 0.3219022882 - - polygalacturonase, putative [Ricinus communis]
19 Hb_001322_030 0.3250160229 - - triacylglycerol lipase, putative [Ricinus communis]
20 Hb_160246_010 0.3322704308 - - calcium ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000740_020 Hb_000740_020 Hb_107429_010 Hb_107429_010 Hb_000740_020--Hb_107429_010 Hb_001437_160 Hb_001437_160 Hb_000740_020--Hb_001437_160 Hb_001226_010 Hb_001226_010 Hb_000740_020--Hb_001226_010 Hb_000836_150 Hb_000836_150 Hb_000740_020--Hb_000836_150 Hb_001143_150 Hb_001143_150 Hb_000740_020--Hb_001143_150 Hb_000917_170 Hb_000917_170 Hb_000740_020--Hb_000917_170 Hb_107429_010--Hb_001437_160 Hb_107429_010--Hb_000917_170 Hb_107429_010--Hb_001226_010 Hb_004163_020 Hb_004163_020 Hb_107429_010--Hb_004163_020 Hb_011457_030 Hb_011457_030 Hb_107429_010--Hb_011457_030 Hb_001437_160--Hb_000836_150 Hb_001437_160--Hb_001226_010 Hb_103739_010 Hb_103739_010 Hb_001437_160--Hb_103739_010 Hb_011344_060 Hb_011344_060 Hb_001437_160--Hb_011344_060 Hb_001322_030 Hb_001322_030 Hb_001226_010--Hb_001322_030 Hb_034904_010 Hb_034904_010 Hb_001226_010--Hb_034904_010 Hb_001226_010--Hb_103739_010 Hb_007145_010 Hb_007145_010 Hb_001226_010--Hb_007145_010 Hb_067034_020 Hb_067034_020 Hb_000836_150--Hb_067034_020 Hb_004728_030 Hb_004728_030 Hb_000836_150--Hb_004728_030 Hb_132840_120 Hb_132840_120 Hb_000836_150--Hb_132840_120 Hb_012092_070 Hb_012092_070 Hb_000836_150--Hb_012092_070 Hb_160246_010 Hb_160246_010 Hb_001143_150--Hb_160246_010 Hb_003266_070 Hb_003266_070 Hb_001143_150--Hb_003266_070 Hb_000175_150 Hb_000175_150 Hb_001143_150--Hb_000175_150 Hb_003643_030 Hb_003643_030 Hb_001143_150--Hb_003643_030 Hb_001143_150--Hb_034904_010 Hb_000703_040 Hb_000703_040 Hb_000917_170--Hb_000703_040 Hb_000917_170--Hb_004163_020 Hb_000917_170--Hb_000175_150 Hb_000917_170--Hb_011457_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0915775 0.0794182 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.109385 0 0 0

CAGE analysis