Hb_107429_010

Information

Type -
Description -
Location Contig107429: 155-2088
Sequence    

Annotation

kegg
ID rcu:RCOM_1479000
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012065867.1
description PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
swissprot
ID Q9FMP5
description Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1
trembl
ID B9SJ93
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1479000 PE=4 SV=1
Gene Ontology
ID GO:0005634
description calcium-dependent protein kinase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107429_010 0.0 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
2 Hb_000740_020 0.1036764958 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
3 Hb_001437_160 0.1477810223 - - PREDICTED: high-affinity nitrate transporter 2.1-like [Jatropha curcas]
4 Hb_000917_170 0.2295625973 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
5 Hb_001226_010 0.2342481817 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
6 Hb_004163_020 0.2447565679 - - -
7 Hb_011457_030 0.2644127483 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
8 Hb_011344_060 0.2769674456 - - PREDICTED: uncharacterized protein LOC105645975 isoform X2 [Jatropha curcas]
9 Hb_000175_150 0.2846295062 desease resistance Gene Name: NB-ARC hypothetical protein B456_009G311700 [Gossypium raimondii]
10 Hb_001143_150 0.2930355719 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]
11 Hb_034904_010 0.3072287155 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
12 Hb_000111_400 0.3078704791 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
13 Hb_001410_050 0.3113391085 - - putative polyprotein [Oryza sativa Japonica Group]
14 Hb_006355_120 0.3113768666 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002259_180 0.3121280896 - - -
16 Hb_000836_150 0.3203931482 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
17 Hb_002435_020 0.32198223 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_000111_440 0.3220924477 - - -
19 Hb_007432_010 0.3240670214 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
20 Hb_001322_030 0.3318034169 - - triacylglycerol lipase, putative [Ricinus communis]

Gene co-expression network

sample Hb_107429_010 Hb_107429_010 Hb_000740_020 Hb_000740_020 Hb_107429_010--Hb_000740_020 Hb_001437_160 Hb_001437_160 Hb_107429_010--Hb_001437_160 Hb_000917_170 Hb_000917_170 Hb_107429_010--Hb_000917_170 Hb_001226_010 Hb_001226_010 Hb_107429_010--Hb_001226_010 Hb_004163_020 Hb_004163_020 Hb_107429_010--Hb_004163_020 Hb_011457_030 Hb_011457_030 Hb_107429_010--Hb_011457_030 Hb_000740_020--Hb_001437_160 Hb_000740_020--Hb_001226_010 Hb_000836_150 Hb_000836_150 Hb_000740_020--Hb_000836_150 Hb_001143_150 Hb_001143_150 Hb_000740_020--Hb_001143_150 Hb_000740_020--Hb_000917_170 Hb_001437_160--Hb_000836_150 Hb_001437_160--Hb_001226_010 Hb_103739_010 Hb_103739_010 Hb_001437_160--Hb_103739_010 Hb_011344_060 Hb_011344_060 Hb_001437_160--Hb_011344_060 Hb_000703_040 Hb_000703_040 Hb_000917_170--Hb_000703_040 Hb_000917_170--Hb_004163_020 Hb_000175_150 Hb_000175_150 Hb_000917_170--Hb_000175_150 Hb_000917_170--Hb_011457_030 Hb_001322_030 Hb_001322_030 Hb_001226_010--Hb_001322_030 Hb_034904_010 Hb_034904_010 Hb_001226_010--Hb_034904_010 Hb_001226_010--Hb_103739_010 Hb_007145_010 Hb_007145_010 Hb_001226_010--Hb_007145_010 Hb_000349_190 Hb_000349_190 Hb_004163_020--Hb_000349_190 Hb_000042_040 Hb_000042_040 Hb_004163_020--Hb_000042_040 Hb_000111_400 Hb_000111_400 Hb_004163_020--Hb_000111_400 Hb_001246_050 Hb_001246_050 Hb_004163_020--Hb_001246_050 Hb_004163_020--Hb_000175_150 Hb_106552_070 Hb_106552_070 Hb_011457_030--Hb_106552_070 Hb_001975_130 Hb_001975_130 Hb_011457_030--Hb_001975_130 Hb_003540_020 Hb_003540_020 Hb_011457_030--Hb_003540_020 Hb_000128_030 Hb_000128_030 Hb_011457_030--Hb_000128_030 Hb_000732_110 Hb_000732_110 Hb_011457_030--Hb_000732_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0237818 0.0112414 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0271285 0 0 0

CAGE analysis