Hb_000917_170

Information

Type -
Description -
Location Contig917: 192172-193312
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14120g
description POPTRDRAFT_769709; hypothetical protein
nr
ID XP_012082013.1
description PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
swissprot
ID Q9LIG0
description Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1
trembl
ID A0A067KBZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18270 PE=4 SV=1
Gene Ontology
ID GO:0016491
description clavaminate synthase-like protein at3g21360

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62283: 192085-192331 , PASA_asmbl_62284: 192417-193152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_170 0.0 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
2 Hb_107429_010 0.2295625973 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
3 Hb_000703_040 0.2563768344 - - hypothetical protein RCOM_1177160 [Ricinus communis]
4 Hb_000740_020 0.2597022728 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
5 Hb_004163_020 0.2632214152 - - -
6 Hb_000175_150 0.2738755977 desease resistance Gene Name: NB-ARC hypothetical protein B456_009G311700 [Gossypium raimondii]
7 Hb_011457_030 0.2860756751 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
8 Hb_000111_400 0.2862070313 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
9 Hb_000008_380 0.3042582521 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000264_120 0.3059114036 - - Stem-specific protein TSJT1, putative [Ricinus communis]
11 Hb_001437_160 0.3116523777 - - PREDICTED: high-affinity nitrate transporter 2.1-like [Jatropha curcas]
12 Hb_000155_090 0.3126147164 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
13 Hb_014720_010 0.3159623146 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005375_050 0.3175124177 - - inorganic pyrophosphatase, putative [Ricinus communis]
15 Hb_000599_320 0.3243325394 - - hypothetical protein JCGZ_17662 [Jatropha curcas]
16 Hb_001143_150 0.3257473689 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]
17 Hb_000025_170 0.3280600415 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002045_190 0.3297068044 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
19 Hb_011344_060 0.3302188833 - - PREDICTED: uncharacterized protein LOC105645975 isoform X2 [Jatropha curcas]
20 Hb_001975_130 0.3320432543 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000917_170 Hb_000917_170 Hb_107429_010 Hb_107429_010 Hb_000917_170--Hb_107429_010 Hb_000703_040 Hb_000703_040 Hb_000917_170--Hb_000703_040 Hb_000740_020 Hb_000740_020 Hb_000917_170--Hb_000740_020 Hb_004163_020 Hb_004163_020 Hb_000917_170--Hb_004163_020 Hb_000175_150 Hb_000175_150 Hb_000917_170--Hb_000175_150 Hb_011457_030 Hb_011457_030 Hb_000917_170--Hb_011457_030 Hb_107429_010--Hb_000740_020 Hb_001437_160 Hb_001437_160 Hb_107429_010--Hb_001437_160 Hb_001226_010 Hb_001226_010 Hb_107429_010--Hb_001226_010 Hb_107429_010--Hb_004163_020 Hb_107429_010--Hb_011457_030 Hb_002259_190 Hb_002259_190 Hb_000703_040--Hb_002259_190 Hb_004324_160 Hb_004324_160 Hb_000703_040--Hb_004324_160 Hb_000321_130 Hb_000321_130 Hb_000703_040--Hb_000321_130 Hb_054865_070 Hb_054865_070 Hb_000703_040--Hb_054865_070 Hb_014720_010 Hb_014720_010 Hb_000703_040--Hb_014720_010 Hb_000740_020--Hb_001437_160 Hb_000740_020--Hb_001226_010 Hb_000836_150 Hb_000836_150 Hb_000740_020--Hb_000836_150 Hb_001143_150 Hb_001143_150 Hb_000740_020--Hb_001143_150 Hb_000349_190 Hb_000349_190 Hb_004163_020--Hb_000349_190 Hb_000042_040 Hb_000042_040 Hb_004163_020--Hb_000042_040 Hb_000111_400 Hb_000111_400 Hb_004163_020--Hb_000111_400 Hb_001246_050 Hb_001246_050 Hb_004163_020--Hb_001246_050 Hb_004163_020--Hb_000175_150 Hb_160246_010 Hb_160246_010 Hb_000175_150--Hb_160246_010 Hb_000175_150--Hb_001143_150 Hb_003740_030 Hb_003740_030 Hb_000175_150--Hb_003740_030 Hb_000663_070 Hb_000663_070 Hb_000175_150--Hb_000663_070 Hb_000111_430 Hb_000111_430 Hb_000175_150--Hb_000111_430 Hb_106552_070 Hb_106552_070 Hb_011457_030--Hb_106552_070 Hb_001975_130 Hb_001975_130 Hb_011457_030--Hb_001975_130 Hb_003540_020 Hb_003540_020 Hb_011457_030--Hb_003540_020 Hb_000128_030 Hb_000128_030 Hb_011457_030--Hb_000128_030 Hb_000732_110 Hb_000732_110 Hb_011457_030--Hb_000732_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.570755 0.194073 0 0.0203499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.416176 0.0764241 0.0167508 0

CAGE analysis