Hb_000128_030

Information

Type -
Description -
Location Contig128: 28608-30609
Sequence    

Annotation

kegg
ID rcu:RCOM_0078700
description hypothetical protein
nr
ID XP_002533484.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5G5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0078700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08661: 29992-30094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000128_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000926_030 0.1151174365 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000062_210 0.175317367 - - PREDICTED: BAHD acyltransferase At5g47980-like [Pyrus x bretschneideri]
4 Hb_030627_010 0.190139834 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 [Sesamum indicum]
5 Hb_000732_110 0.2154154148 - - hypothetical protein JCGZ_21339 [Jatropha curcas]
6 Hb_004096_230 0.2181797865 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
7 Hb_000184_010 0.2224403024 - - mutt domain protein, putative [Ricinus communis]
8 Hb_011609_130 0.2369045572 - - -
9 Hb_001135_070 0.2385135005 - - glutathione-s-transferase omega, putative [Ricinus communis]
10 Hb_024494_010 0.2392786666 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
11 Hb_001623_380 0.2439529182 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
12 Hb_000961_060 0.2485587658 - - uvb-resistance protein uvr8, putative [Ricinus communis]
13 Hb_003517_110 0.2486124958 - - PREDICTED: uncharacterized protein LOC105633058 [Jatropha curcas]
14 Hb_001379_120 0.2487210713 - - hypothetical protein POPTR_0001s29730g [Populus trichocarpa]
15 Hb_000977_100 0.2500743133 - - PREDICTED: LOW QUALITY PROTEIN: acetolactate synthase small subunit 1, chloroplastic [Jatropha curcas]
16 Hb_000796_130 0.2524666165 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
17 Hb_008221_190 0.2525925944 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
18 Hb_002641_020 0.2539314931 - - 3'-5' exonuclease, putative [Ricinus communis]
19 Hb_005779_020 0.2559636428 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000465_030 0.2577600183 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000128_030 Hb_000128_030 Hb_000926_030 Hb_000926_030 Hb_000128_030--Hb_000926_030 Hb_000062_210 Hb_000062_210 Hb_000128_030--Hb_000062_210 Hb_030627_010 Hb_030627_010 Hb_000128_030--Hb_030627_010 Hb_000732_110 Hb_000732_110 Hb_000128_030--Hb_000732_110 Hb_004096_230 Hb_004096_230 Hb_000128_030--Hb_004096_230 Hb_000184_010 Hb_000184_010 Hb_000128_030--Hb_000184_010 Hb_024494_010 Hb_024494_010 Hb_000926_030--Hb_024494_010 Hb_000961_060 Hb_000961_060 Hb_000926_030--Hb_000961_060 Hb_000926_030--Hb_004096_230 Hb_011609_130 Hb_011609_130 Hb_000926_030--Hb_011609_130 Hb_008221_190 Hb_008221_190 Hb_000926_030--Hb_008221_190 Hb_000062_210--Hb_030627_010 Hb_000796_130 Hb_000796_130 Hb_000062_210--Hb_000796_130 Hb_000525_070 Hb_000525_070 Hb_000062_210--Hb_000525_070 Hb_003026_040 Hb_003026_040 Hb_000062_210--Hb_003026_040 Hb_000763_040 Hb_000763_040 Hb_000062_210--Hb_000763_040 Hb_030627_010--Hb_000796_130 Hb_002183_080 Hb_002183_080 Hb_030627_010--Hb_002183_080 Hb_003540_100 Hb_003540_100 Hb_030627_010--Hb_003540_100 Hb_007558_130 Hb_007558_130 Hb_030627_010--Hb_007558_130 Hb_000732_110--Hb_011609_130 Hb_002639_170 Hb_002639_170 Hb_000732_110--Hb_002639_170 Hb_000732_110--Hb_000926_030 Hb_001241_020 Hb_001241_020 Hb_000732_110--Hb_001241_020 Hb_000261_530 Hb_000261_530 Hb_000732_110--Hb_000261_530 Hb_007120_120 Hb_007120_120 Hb_004096_230--Hb_007120_120 Hb_001652_100 Hb_001652_100 Hb_004096_230--Hb_001652_100 Hb_006711_030 Hb_006711_030 Hb_004096_230--Hb_006711_030 Hb_009663_020 Hb_009663_020 Hb_004096_230--Hb_009663_020 Hb_167188_020 Hb_167188_020 Hb_004096_230--Hb_167188_020 Hb_007044_240 Hb_007044_240 Hb_004096_230--Hb_007044_240 Hb_002641_020 Hb_002641_020 Hb_000184_010--Hb_002641_020 Hb_001488_250 Hb_001488_250 Hb_000184_010--Hb_001488_250 Hb_005000_110 Hb_005000_110 Hb_000184_010--Hb_005000_110 Hb_002272_210 Hb_002272_210 Hb_000184_010--Hb_002272_210 Hb_000329_500 Hb_000329_500 Hb_000184_010--Hb_000329_500 Hb_001159_050 Hb_001159_050 Hb_000184_010--Hb_001159_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.233958 0.0776429 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0690903 0 0 0.135605

CAGE analysis