Hb_008221_190

Information

Type -
Description -
Location Contig8221: 89848-96241
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39390g
description hypothetical protein
nr
ID XP_012084889.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
swissprot
ID C0LGG8
description Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1
trembl
ID A0A067JT57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20306 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at1g53430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008221_190 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
2 Hb_000958_060 0.105463029 - - conserved hypothetical protein [Ricinus communis]
3 Hb_163950_090 0.1149126937 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
4 Hb_004218_060 0.1220854766 - - annexin [Manihot esculenta]
5 Hb_145188_010 0.1227926443 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
6 Hb_002710_040 0.126917587 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
7 Hb_001942_060 0.1310543839 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002843_130 0.132588217 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
9 Hb_006267_040 0.1366932511 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
10 Hb_000465_030 0.1366956893 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
11 Hb_005736_120 0.1376242615 - - PREDICTED: carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic [Gossypium raimondii]
12 Hb_001958_030 0.138603354 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
13 Hb_000362_080 0.1405035931 - - hypothetical protein EUTSA_v10027329mg, partial [Eutrema salsugineum]
14 Hb_003387_010 0.1434816859 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
15 Hb_024494_010 0.1453754603 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_000358_160 0.1457572928 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
17 Hb_000749_140 0.1464199083 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
18 Hb_007262_010 0.1469939802 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X2 [Jatropha curcas]
19 Hb_000080_070 0.1471681061 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
20 Hb_003750_110 0.1489258007 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]

Gene co-expression network

sample Hb_008221_190 Hb_008221_190 Hb_000958_060 Hb_000958_060 Hb_008221_190--Hb_000958_060 Hb_163950_090 Hb_163950_090 Hb_008221_190--Hb_163950_090 Hb_004218_060 Hb_004218_060 Hb_008221_190--Hb_004218_060 Hb_145188_010 Hb_145188_010 Hb_008221_190--Hb_145188_010 Hb_002710_040 Hb_002710_040 Hb_008221_190--Hb_002710_040 Hb_001942_060 Hb_001942_060 Hb_008221_190--Hb_001942_060 Hb_007520_050 Hb_007520_050 Hb_000958_060--Hb_007520_050 Hb_001369_460 Hb_001369_460 Hb_000958_060--Hb_001369_460 Hb_000958_060--Hb_163950_090 Hb_000107_580 Hb_000107_580 Hb_000958_060--Hb_000107_580 Hb_000958_060--Hb_002710_040 Hb_005736_120 Hb_005736_120 Hb_163950_090--Hb_005736_120 Hb_163950_090--Hb_001942_060 Hb_163950_090--Hb_002710_040 Hb_000749_140 Hb_000749_140 Hb_163950_090--Hb_000749_140 Hb_163950_090--Hb_004218_060 Hb_163950_090--Hb_145188_010 Hb_004218_060--Hb_005736_120 Hb_004218_060--Hb_145188_010 Hb_004218_060--Hb_002710_040 Hb_004218_060--Hb_001942_060 Hb_007262_010 Hb_007262_010 Hb_004218_060--Hb_007262_010 Hb_145188_010--Hb_007262_010 Hb_145188_010--Hb_005736_120 Hb_001476_040 Hb_001476_040 Hb_145188_010--Hb_001476_040 Hb_000362_080 Hb_000362_080 Hb_145188_010--Hb_000362_080 Hb_001958_030 Hb_001958_030 Hb_002710_040--Hb_001958_030 Hb_003387_010 Hb_003387_010 Hb_002710_040--Hb_003387_010 Hb_000188_070 Hb_000188_070 Hb_002710_040--Hb_000188_070 Hb_002710_040--Hb_001942_060 Hb_001233_050 Hb_001233_050 Hb_001942_060--Hb_001233_050 Hb_001942_060--Hb_000749_140 Hb_101133_030 Hb_101133_030 Hb_001942_060--Hb_101133_030 Hb_002078_280 Hb_002078_280 Hb_001942_060--Hb_002078_280 Hb_000821_030 Hb_000821_030 Hb_001942_060--Hb_000821_030 Hb_004627_050 Hb_004627_050 Hb_001942_060--Hb_004627_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00648258 0.302157 0.052792 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0116989 0 0.0185629 0.149701

CAGE analysis