Hb_000107_580

Information

Type -
Description -
Location Contig107: 442819-444721
Sequence    

Annotation

kegg
ID pop:POPTR_0008s08440g
description POPTRDRAFT_564011, POPTRDRAFT_765722; diminuto family protein
nr
ID XP_012072982.1
description PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
swissprot
ID P93472
description Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1
trembl
ID B9HHN5
description Diminuto family protein OS=Populus trichocarpa GN=POPTR_0008s08440g PE=4 SV=1
Gene Ontology
ID GO:0008762
description delta -sterol reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_580 0.0 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
2 Hb_003050_140 0.1019064625 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
3 Hb_000152_650 0.1064408619 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
4 Hb_001369_590 0.1093871653 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
5 Hb_105148_020 0.112752249 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
6 Hb_001357_160 0.1148645537 - - conserved hypothetical protein [Ricinus communis]
7 Hb_074240_030 0.1164032043 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
8 Hb_006620_030 0.121453873 - - nitrate reductase, putative [Ricinus communis]
9 Hb_000010_320 0.1234825849 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
10 Hb_001671_070 0.1244677733 - - kinase, putative [Ricinus communis]
11 Hb_000160_260 0.1249493219 - - nutrient reservoir, putative [Ricinus communis]
12 Hb_001386_060 0.1256138856 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
13 Hb_000735_190 0.1263580039 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
14 Hb_001166_010 0.1277789281 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
15 Hb_054615_010 0.1290840773 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
16 Hb_000431_080 0.1300214449 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
17 Hb_019053_040 0.1307260846 - - cytochrome P450, putative [Ricinus communis]
18 Hb_005365_040 0.131018664 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
19 Hb_074197_050 0.1314538516 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
20 Hb_002499_050 0.1315408516 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000107_580 Hb_000107_580 Hb_003050_140 Hb_003050_140 Hb_000107_580--Hb_003050_140 Hb_000152_650 Hb_000152_650 Hb_000107_580--Hb_000152_650 Hb_001369_590 Hb_001369_590 Hb_000107_580--Hb_001369_590 Hb_105148_020 Hb_105148_020 Hb_000107_580--Hb_105148_020 Hb_001357_160 Hb_001357_160 Hb_000107_580--Hb_001357_160 Hb_074240_030 Hb_074240_030 Hb_000107_580--Hb_074240_030 Hb_011930_190 Hb_011930_190 Hb_003050_140--Hb_011930_190 Hb_031377_010 Hb_031377_010 Hb_003050_140--Hb_031377_010 Hb_000144_130 Hb_000144_130 Hb_003050_140--Hb_000144_130 Hb_002044_100 Hb_002044_100 Hb_003050_140--Hb_002044_100 Hb_000510_250 Hb_000510_250 Hb_003050_140--Hb_000510_250 Hb_001671_070 Hb_001671_070 Hb_003050_140--Hb_001671_070 Hb_002121_030 Hb_002121_030 Hb_000152_650--Hb_002121_030 Hb_000264_160 Hb_000264_160 Hb_000152_650--Hb_000264_160 Hb_000152_650--Hb_001369_590 Hb_054615_010 Hb_054615_010 Hb_000152_650--Hb_054615_010 Hb_104014_010 Hb_104014_010 Hb_000152_650--Hb_104014_010 Hb_005365_040 Hb_005365_040 Hb_000152_650--Hb_005365_040 Hb_001369_590--Hb_005365_040 Hb_001369_590--Hb_002121_030 Hb_002499_050 Hb_002499_050 Hb_001369_590--Hb_002499_050 Hb_006620_030 Hb_006620_030 Hb_001369_590--Hb_006620_030 Hb_000084_210 Hb_000084_210 Hb_001369_590--Hb_000084_210 Hb_019053_040 Hb_019053_040 Hb_105148_020--Hb_019053_040 Hb_105148_020--Hb_006620_030 Hb_001166_010 Hb_001166_010 Hb_105148_020--Hb_001166_010 Hb_023582_010 Hb_023582_010 Hb_105148_020--Hb_023582_010 Hb_001258_130 Hb_001258_130 Hb_105148_020--Hb_001258_130 Hb_023827_030 Hb_023827_030 Hb_105148_020--Hb_023827_030 Hb_002243_030 Hb_002243_030 Hb_001357_160--Hb_002243_030 Hb_001357_160--Hb_074240_030 Hb_015299_040 Hb_015299_040 Hb_001357_160--Hb_015299_040 Hb_158845_010 Hb_158845_010 Hb_001357_160--Hb_158845_010 Hb_001856_190 Hb_001856_190 Hb_001357_160--Hb_001856_190 Hb_000010_320 Hb_000010_320 Hb_001357_160--Hb_000010_320 Hb_074240_030--Hb_000010_320 Hb_074240_030--Hb_001856_190 Hb_074240_030--Hb_015299_040 Hb_074240_030--Hb_054615_010 Hb_003090_020 Hb_003090_020 Hb_074240_030--Hb_003090_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0670605 2.40661 0.641013 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0241974 0.045485 0.0289707 0.759753

CAGE analysis