Hb_003050_140

Information

Type -
Description -
Location Contig3050: 153502-157589
Sequence    

Annotation

kegg
ID rcu:RCOM_0632940
description Potassium channel KAT2, putative
nr
ID XP_012072096.1
description PREDICTED: potassium channel KAT1 [Jatropha curcas]
swissprot
ID Q39128
description Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2
trembl
ID A0A067KP08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04609 PE=4 SV=1
Gene Ontology
ID GO:0005249
description potassium channel kat1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32134: 153482-154757 , PASA_asmbl_32135: 155708-156618 , PASA_asmbl_32137: 156865-157729
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_140 0.0 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
2 Hb_011930_190 0.0708502511 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
3 Hb_031377_010 0.0718279318 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
4 Hb_000144_130 0.0758297022 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002044_100 0.0779844917 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
6 Hb_000510_250 0.0803394011 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
7 Hb_001671_070 0.0812107317 - - kinase, putative [Ricinus communis]
8 Hb_001439_160 0.0816720815 - - PREDICTED: uncharacterized protein LOC105644097 [Jatropha curcas]
9 Hb_001166_010 0.0842363072 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
10 Hb_000172_660 0.0902312317 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
11 Hb_032880_010 0.0902791663 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
12 Hb_005460_040 0.090980942 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
13 Hb_000130_340 0.0922110296 - - -
14 Hb_007617_030 0.0972924296 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
15 Hb_000735_190 0.0974293731 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
16 Hb_001221_550 0.097622905 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
17 Hb_002929_030 0.0977466532 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
18 Hb_000887_030 0.0980558877 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_002259_120 0.0997674143 - - tonoplast intrinsic protein, putative [Ricinus communis]
20 Hb_007853_030 0.101215189 - - structural molecule, putative [Ricinus communis]

Gene co-expression network

sample Hb_003050_140 Hb_003050_140 Hb_011930_190 Hb_011930_190 Hb_003050_140--Hb_011930_190 Hb_031377_010 Hb_031377_010 Hb_003050_140--Hb_031377_010 Hb_000144_130 Hb_000144_130 Hb_003050_140--Hb_000144_130 Hb_002044_100 Hb_002044_100 Hb_003050_140--Hb_002044_100 Hb_000510_250 Hb_000510_250 Hb_003050_140--Hb_000510_250 Hb_001671_070 Hb_001671_070 Hb_003050_140--Hb_001671_070 Hb_011930_190--Hb_031377_010 Hb_011930_190--Hb_002044_100 Hb_011930_190--Hb_000144_130 Hb_000172_660 Hb_000172_660 Hb_011930_190--Hb_000172_660 Hb_011930_190--Hb_000510_250 Hb_031377_010--Hb_000144_130 Hb_031377_010--Hb_001671_070 Hb_031377_010--Hb_000172_660 Hb_031377_010--Hb_002044_100 Hb_007617_030 Hb_007617_030 Hb_031377_010--Hb_007617_030 Hb_031377_010--Hb_000510_250 Hb_000144_130--Hb_002044_100 Hb_000144_130--Hb_000510_250 Hb_000144_130--Hb_001671_070 Hb_001166_010 Hb_001166_010 Hb_000144_130--Hb_001166_010 Hb_000130_340 Hb_000130_340 Hb_000144_130--Hb_000130_340 Hb_002044_100--Hb_000510_250 Hb_002044_100--Hb_001166_010 Hb_007681_010 Hb_007681_010 Hb_002044_100--Hb_007681_010 Hb_002259_120 Hb_002259_120 Hb_000510_250--Hb_002259_120 Hb_000510_250--Hb_001166_010 Hb_012675_040 Hb_012675_040 Hb_000510_250--Hb_012675_040 Hb_000160_260 Hb_000160_260 Hb_001671_070--Hb_000160_260 Hb_000735_190 Hb_000735_190 Hb_001671_070--Hb_000735_190 Hb_032880_010 Hb_032880_010 Hb_001671_070--Hb_032880_010 Hb_001671_070--Hb_000130_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0293031 0.107483 11.7688 3.27535 0.0215229 0.00640218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0166218 0.0523189 0.0748894 0.0363435 5.06632

CAGE analysis