Hb_003540_100

Information

Type -
Description -
Location Contig3540: 61212-69375
Sequence    

Annotation

kegg
ID rcu:RCOM_1125640
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_002528564.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q76CU2
description Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1
trembl
ID B9SRE5
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_1125640 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36701: 65934-66732 , PASA_asmbl_36702: 67505-68282 , PASA_asmbl_36703: 68290-68570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_100 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_001439_020 0.0606511797 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
3 Hb_006922_070 0.1647609932 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
4 Hb_009316_050 0.1954339677 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
5 Hb_004374_160 0.210831444 transcription factor TF Family: bHLH hypothetical protein JCGZ_20587 [Jatropha curcas]
6 Hb_002170_080 0.2196184114 - - phosphate transporter [Manihot esculenta]
7 Hb_011794_100 0.2221390983 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
8 Hb_005154_080 0.2283863744 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640764 [Jatropha curcas]
9 Hb_030627_010 0.2349689738 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 [Sesamum indicum]
10 Hb_003052_020 0.236358296 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000023_050 0.2478272617 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
12 Hb_143766_070 0.2553274196 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
13 Hb_004357_060 0.2573673941 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
14 Hb_000230_170 0.2588685605 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
15 Hb_006775_110 0.2637873539 - - PREDICTED: uncharacterized protein LOC105649734 [Jatropha curcas]
16 Hb_039435_010 0.2669288643 - - hypothetical protein SORBIDRAFT_10g025530 [Sorghum bicolor]
17 Hb_004088_050 0.2681832119 - - hypothetical protein VITISV_027174 [Vitis vinifera]
18 Hb_024570_030 0.2683311813 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000139_270 0.27011758 - - hypothetical protein POPTR_0008s14890g [Populus trichocarpa]
20 Hb_001488_350 0.2748161036 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003540_100 Hb_003540_100 Hb_001439_020 Hb_001439_020 Hb_003540_100--Hb_001439_020 Hb_006922_070 Hb_006922_070 Hb_003540_100--Hb_006922_070 Hb_009316_050 Hb_009316_050 Hb_003540_100--Hb_009316_050 Hb_004374_160 Hb_004374_160 Hb_003540_100--Hb_004374_160 Hb_002170_080 Hb_002170_080 Hb_003540_100--Hb_002170_080 Hb_011794_100 Hb_011794_100 Hb_003540_100--Hb_011794_100 Hb_001439_020--Hb_006922_070 Hb_001439_020--Hb_009316_050 Hb_001439_020--Hb_011794_100 Hb_001439_020--Hb_004374_160 Hb_001439_020--Hb_002170_080 Hb_006922_070--Hb_009316_050 Hb_024570_030 Hb_024570_030 Hb_006922_070--Hb_024570_030 Hb_005154_080 Hb_005154_080 Hb_006922_070--Hb_005154_080 Hb_006922_070--Hb_002170_080 Hb_009316_050--Hb_002170_080 Hb_027654_010 Hb_027654_010 Hb_009316_050--Hb_027654_010 Hb_010381_080 Hb_010381_080 Hb_009316_050--Hb_010381_080 Hb_000907_130 Hb_000907_130 Hb_009316_050--Hb_000907_130 Hb_002835_050 Hb_002835_050 Hb_009316_050--Hb_002835_050 Hb_001488_350 Hb_001488_350 Hb_004374_160--Hb_001488_350 Hb_039435_010 Hb_039435_010 Hb_004374_160--Hb_039435_010 Hb_000621_030 Hb_000621_030 Hb_004374_160--Hb_000621_030 Hb_004881_070 Hb_004881_070 Hb_004374_160--Hb_004881_070 Hb_002817_050 Hb_002817_050 Hb_004374_160--Hb_002817_050 Hb_005493_010 Hb_005493_010 Hb_004374_160--Hb_005493_010 Hb_022137_050 Hb_022137_050 Hb_002170_080--Hb_022137_050 Hb_022693_010 Hb_022693_010 Hb_002170_080--Hb_022693_010 Hb_000041_250 Hb_000041_250 Hb_002170_080--Hb_000041_250 Hb_000235_040 Hb_000235_040 Hb_002170_080--Hb_000235_040 Hb_009393_140 Hb_009393_140 Hb_002170_080--Hb_009393_140 Hb_002401_020 Hb_002401_020 Hb_011794_100--Hb_002401_020 Hb_011794_100--Hb_006922_070 Hb_000139_270 Hb_000139_270 Hb_011794_100--Hb_000139_270 Hb_000668_130 Hb_000668_130 Hb_011794_100--Hb_000668_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0162343 0.0159284 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0154995 0 0.009205 0.0332538

CAGE analysis