Hb_009316_050

Information

Type -
Description -
Location Contig9316: 65206-65697
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06120g
description POPTRDRAFT_562654; hypothetical protein
nr
ID XP_012075176.1
description PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
swissprot
ID Q6NKR1
description RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2 SV=1
trembl
ID A0A067KSH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09359 PE=4 SV=1
Gene Ontology
ID GO:0046872
description probable e3 ubiquitin-protein ligase rha2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009316_050 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
2 Hb_002170_080 0.1425033825 - - phosphate transporter [Manihot esculenta]
3 Hb_006922_070 0.1513953212 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
4 Hb_027654_010 0.1641313167 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
5 Hb_010381_080 0.177896961 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000907_130 0.1825493499 - - -
7 Hb_002835_050 0.1838648069 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
8 Hb_012539_080 0.1849842608 - - Polyprotein, putative [Solanum demissum]
9 Hb_043935_010 0.1863181503 - - Receptor protein kinase-like protein [Medicago truncatula]
10 Hb_002740_060 0.1911836751 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
11 Hb_005155_030 0.1930209194 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_004392_030 0.1947710036 - - oxidoreductase family protein [Populus trichocarpa]
13 Hb_003540_100 0.1954339677 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_001439_020 0.19594997 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
15 Hb_113379_010 0.1970039612 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
16 Hb_024570_030 0.1971231641 - - cytochrome P450, putative [Ricinus communis]
17 Hb_004242_200 0.1983019798 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
18 Hb_114893_010 0.1983802148 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
19 Hb_004896_030 0.2050207292 - - hypothetical protein VITISV_007475 [Vitis vinifera]
20 Hb_097783_030 0.2064766624 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]

Gene co-expression network

sample Hb_009316_050 Hb_009316_050 Hb_002170_080 Hb_002170_080 Hb_009316_050--Hb_002170_080 Hb_006922_070 Hb_006922_070 Hb_009316_050--Hb_006922_070 Hb_027654_010 Hb_027654_010 Hb_009316_050--Hb_027654_010 Hb_010381_080 Hb_010381_080 Hb_009316_050--Hb_010381_080 Hb_000907_130 Hb_000907_130 Hb_009316_050--Hb_000907_130 Hb_002835_050 Hb_002835_050 Hb_009316_050--Hb_002835_050 Hb_022137_050 Hb_022137_050 Hb_002170_080--Hb_022137_050 Hb_022693_010 Hb_022693_010 Hb_002170_080--Hb_022693_010 Hb_000041_250 Hb_000041_250 Hb_002170_080--Hb_000041_250 Hb_000235_040 Hb_000235_040 Hb_002170_080--Hb_000235_040 Hb_009393_140 Hb_009393_140 Hb_002170_080--Hb_009393_140 Hb_001439_020 Hb_001439_020 Hb_006922_070--Hb_001439_020 Hb_003540_100 Hb_003540_100 Hb_006922_070--Hb_003540_100 Hb_024570_030 Hb_024570_030 Hb_006922_070--Hb_024570_030 Hb_005154_080 Hb_005154_080 Hb_006922_070--Hb_005154_080 Hb_006922_070--Hb_002170_080 Hb_015817_010 Hb_015817_010 Hb_027654_010--Hb_015817_010 Hb_043935_010 Hb_043935_010 Hb_027654_010--Hb_043935_010 Hb_027654_010--Hb_010381_080 Hb_006147_020 Hb_006147_020 Hb_027654_010--Hb_006147_020 Hb_004392_030 Hb_004392_030 Hb_027654_010--Hb_004392_030 Hb_001699_020 Hb_001699_020 Hb_027654_010--Hb_001699_020 Hb_004242_200 Hb_004242_200 Hb_010381_080--Hb_004242_200 Hb_010381_080--Hb_043935_010 Hb_114893_010 Hb_114893_010 Hb_010381_080--Hb_114893_010 Hb_010381_080--Hb_006147_020 Hb_001300_240 Hb_001300_240 Hb_010381_080--Hb_001300_240 Hb_004459_050 Hb_004459_050 Hb_010381_080--Hb_004459_050 Hb_000907_130--Hb_002835_050 Hb_005155_030 Hb_005155_030 Hb_000907_130--Hb_005155_030 Hb_097783_030 Hb_097783_030 Hb_000907_130--Hb_097783_030 Hb_003030_050 Hb_003030_050 Hb_000907_130--Hb_003030_050 Hb_012539_080 Hb_012539_080 Hb_000907_130--Hb_012539_080 Hb_000907_130--Hb_043935_010 Hb_002835_050--Hb_005155_030 Hb_002835_050--Hb_003030_050 Hb_002835_050--Hb_097783_030 Hb_002835_050--Hb_012539_080 Hb_002835_050--Hb_004392_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.287441 0.224112 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.108281 0 0.180333 1.00845

CAGE analysis