Hb_005154_080

Information

Type transcription factor
Description TF Family: PHD
Location Contig5154: 69863-77899
Sequence    

Annotation

kegg
ID tcc:TCM_041594
description PHD finger transcription factor, putative
nr
ID XP_012080552.1
description PREDICTED: uncharacterized protein LOC105640764 [Jatropha curcas]
swissprot
ID F4IXE7
description Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1
trembl
ID A0A067LF08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46489: 69687-70614 , PASA_asmbl_46490: 70742-71163 , PASA_asmbl_46492: 77823-106127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005154_080 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640764 [Jatropha curcas]
2 Hb_002170_080 0.1776787703 - - phosphate transporter [Manihot esculenta]
3 Hb_022137_050 0.1961569082 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
4 Hb_004357_060 0.1979585573 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
5 Hb_000977_100 0.1990217453 - - PREDICTED: LOW QUALITY PROTEIN: acetolactate synthase small subunit 1, chloroplastic [Jatropha curcas]
6 Hb_004837_100 0.2006031591 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
7 Hb_000019_080 0.2041904128 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
8 Hb_005779_020 0.2048153013 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004162_270 0.2052918017 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000395_010 0.2055293988 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
11 Hb_009296_030 0.2095547342 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
12 Hb_000206_170 0.2100695771 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
13 Hb_000352_280 0.2133375372 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
14 Hb_006922_070 0.2134248342 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
15 Hb_000023_050 0.215838761 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
16 Hb_001579_280 0.2171504738 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Jatropha curcas]
17 Hb_006420_010 0.2187050451 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
18 Hb_074197_030 0.221500004 - - unnamed protein product [Vitis vinifera]
19 Hb_005271_100 0.2225766544 - - unnamed protein product [Vitis vinifera]
20 Hb_002477_020 0.2239970001 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]

Gene co-expression network

sample Hb_005154_080 Hb_005154_080 Hb_002170_080 Hb_002170_080 Hb_005154_080--Hb_002170_080 Hb_022137_050 Hb_022137_050 Hb_005154_080--Hb_022137_050 Hb_004357_060 Hb_004357_060 Hb_005154_080--Hb_004357_060 Hb_000977_100 Hb_000977_100 Hb_005154_080--Hb_000977_100 Hb_004837_100 Hb_004837_100 Hb_005154_080--Hb_004837_100 Hb_000019_080 Hb_000019_080 Hb_005154_080--Hb_000019_080 Hb_002170_080--Hb_022137_050 Hb_009316_050 Hb_009316_050 Hb_002170_080--Hb_009316_050 Hb_022693_010 Hb_022693_010 Hb_002170_080--Hb_022693_010 Hb_000041_250 Hb_000041_250 Hb_002170_080--Hb_000041_250 Hb_000235_040 Hb_000235_040 Hb_002170_080--Hb_000235_040 Hb_009393_140 Hb_009393_140 Hb_002170_080--Hb_009393_140 Hb_009296_030 Hb_009296_030 Hb_022137_050--Hb_009296_030 Hb_015141_010 Hb_015141_010 Hb_022137_050--Hb_015141_010 Hb_002477_020 Hb_002477_020 Hb_022137_050--Hb_002477_020 Hb_000352_280 Hb_000352_280 Hb_022137_050--Hb_000352_280 Hb_006472_040 Hb_006472_040 Hb_022137_050--Hb_006472_040 Hb_004162_270 Hb_004162_270 Hb_004357_060--Hb_004162_270 Hb_005784_030 Hb_005784_030 Hb_004357_060--Hb_005784_030 Hb_006420_010 Hb_006420_010 Hb_004357_060--Hb_006420_010 Hb_000054_030 Hb_000054_030 Hb_004357_060--Hb_000054_030 Hb_005917_020 Hb_005917_020 Hb_004357_060--Hb_005917_020 Hb_007904_060 Hb_007904_060 Hb_004357_060--Hb_007904_060 Hb_005779_020 Hb_005779_020 Hb_000977_100--Hb_005779_020 Hb_177281_010 Hb_177281_010 Hb_000977_100--Hb_177281_010 Hb_005271_100 Hb_005271_100 Hb_000977_100--Hb_005271_100 Hb_047418_010 Hb_047418_010 Hb_000977_100--Hb_047418_010 Hb_004236_040 Hb_004236_040 Hb_000977_100--Hb_004236_040 Hb_001623_380 Hb_001623_380 Hb_000977_100--Hb_001623_380 Hb_004837_100--Hb_000019_080 Hb_003053_070 Hb_003053_070 Hb_004837_100--Hb_003053_070 Hb_000684_200 Hb_000684_200 Hb_004837_100--Hb_000684_200 Hb_000395_010 Hb_000395_010 Hb_004837_100--Hb_000395_010 Hb_001579_280 Hb_001579_280 Hb_004837_100--Hb_001579_280 Hb_004837_100--Hb_004162_270 Hb_000019_080--Hb_000352_280 Hb_000803_170 Hb_000803_170 Hb_000019_080--Hb_000803_170 Hb_172426_060 Hb_172426_060 Hb_000019_080--Hb_172426_060 Hb_000019_080--Hb_001579_280 Hb_010557_010 Hb_010557_010 Hb_000019_080--Hb_010557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.203536 0.0798714 0.00573984 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0139064 0.0656602 0.0209475 0.0564127 0.280385

CAGE analysis