Hb_000977_100

Information

Type -
Description -
Location Contig977: 63470-74974
Sequence    

Annotation

kegg
ID rcu:RCOM_1076730
description acetolactate synthase, putative (EC:2.2.1.6)
nr
ID XP_012078909.1
description PREDICTED: LOW QUALITY PROTEIN: acetolactate synthase small subunit 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9FFF4
description Acetolactate synthase small subunit 1, chloroplastic OS=Arabidopsis thaliana GN=VAT1 PE=1 SV=1
trembl
ID B9RM03
description Acetolactate synthase, putative OS=Ricinus communis GN=RCOM_1076730 PE=4 SV=1
Gene Ontology
ID GO:0005829
description acetolactate synthase small subunit chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64150: 63183-74991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_100 0.0 - - PREDICTED: LOW QUALITY PROTEIN: acetolactate synthase small subunit 1, chloroplastic [Jatropha curcas]
2 Hb_005779_020 0.1030737725 - - conserved hypothetical protein [Ricinus communis]
3 Hb_177281_010 0.1435983413 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
4 Hb_005271_100 0.1526736372 - - unnamed protein product [Vitis vinifera]
5 Hb_047418_010 0.1535829715 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
6 Hb_004236_040 0.1541616964 - - biotin carboxyl carrier protein [Vernicia fordii]
7 Hb_001623_380 0.1620029203 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
8 Hb_015175_040 0.1667370601 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002272_220 0.1719451531 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005237_020 0.1719710449 - - Kinesin heavy chain, putative [Ricinus communis]
11 Hb_000711_030 0.1763054679 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
12 Hb_000206_170 0.177040197 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
13 Hb_006153_150 0.1779042414 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
14 Hb_000974_040 0.1832732666 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
15 Hb_001163_110 0.1847922565 - - PREDICTED: serine/threonine-protein kinase D6PKL2 [Jatropha curcas]
16 Hb_001135_070 0.1856317014 - - glutathione-s-transferase omega, putative [Ricinus communis]
17 Hb_089966_010 0.1874708094 - - -
18 Hb_012545_040 0.1888532463 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_004650_050 0.191759144 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
20 Hb_002411_100 0.1928223655 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]

Gene co-expression network

sample Hb_000977_100 Hb_000977_100 Hb_005779_020 Hb_005779_020 Hb_000977_100--Hb_005779_020 Hb_177281_010 Hb_177281_010 Hb_000977_100--Hb_177281_010 Hb_005271_100 Hb_005271_100 Hb_000977_100--Hb_005271_100 Hb_047418_010 Hb_047418_010 Hb_000977_100--Hb_047418_010 Hb_004236_040 Hb_004236_040 Hb_000977_100--Hb_004236_040 Hb_001623_380 Hb_001623_380 Hb_000977_100--Hb_001623_380 Hb_005779_020--Hb_004236_040 Hb_005779_020--Hb_177281_010 Hb_005779_020--Hb_047418_010 Hb_000206_170 Hb_000206_170 Hb_005779_020--Hb_000206_170 Hb_005779_020--Hb_005271_100 Hb_000393_040 Hb_000393_040 Hb_177281_010--Hb_000393_040 Hb_001135_070 Hb_001135_070 Hb_177281_010--Hb_001135_070 Hb_000974_040 Hb_000974_040 Hb_177281_010--Hb_000974_040 Hb_177281_010--Hb_001623_380 Hb_137216_010 Hb_137216_010 Hb_177281_010--Hb_137216_010 Hb_002495_090 Hb_002495_090 Hb_177281_010--Hb_002495_090 Hb_005237_020 Hb_005237_020 Hb_005271_100--Hb_005237_020 Hb_000958_060 Hb_000958_060 Hb_005271_100--Hb_000958_060 Hb_005271_100--Hb_177281_010 Hb_000961_060 Hb_000961_060 Hb_005271_100--Hb_000961_060 Hb_047418_010--Hb_004236_040 Hb_000019_080 Hb_000019_080 Hb_047418_010--Hb_000019_080 Hb_058620_080 Hb_058620_080 Hb_047418_010--Hb_058620_080 Hb_003948_020 Hb_003948_020 Hb_047418_010--Hb_003948_020 Hb_004650_050 Hb_004650_050 Hb_047418_010--Hb_004650_050 Hb_000442_070 Hb_000442_070 Hb_047418_010--Hb_000442_070 Hb_004236_040--Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_004236_040--Hb_002411_100 Hb_004236_040--Hb_000019_080 Hb_004236_040--Hb_058620_080 Hb_005563_040 Hb_005563_040 Hb_004236_040--Hb_005563_040 Hb_001623_380--Hb_001135_070 Hb_008707_040 Hb_008707_040 Hb_001623_380--Hb_008707_040 Hb_003680_060 Hb_003680_060 Hb_001623_380--Hb_003680_060 Hb_002272_220 Hb_002272_220 Hb_001623_380--Hb_002272_220 Hb_001623_380--Hb_000393_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204357 0.0298554 19.3347 6.37074 0.0198875 0.0381856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25574 2.18507 1.76253 0.809329 14.7898

CAGE analysis