Hb_047418_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig47418: 2336-4611
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15090g
description POPTRDRAFT_225837; hypothetical protein
nr
ID XP_012084025.1
description PREDICTED: myb-related protein P [Jatropha curcas]
swissprot
ID O22264
description Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1
trembl
ID A0A067JYL5
description MYB family protein OS=Jatropha curcas GN=JCGZ_18963 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047418_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
2 Hb_004236_040 0.0727267098 - - biotin carboxyl carrier protein [Vernicia fordii]
3 Hb_000019_080 0.1303325894 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
4 Hb_058620_080 0.1331894757 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
5 Hb_003948_020 0.1364588193 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
6 Hb_004650_050 0.1368197846 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
7 Hb_000442_070 0.143931747 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
8 Hb_002411_100 0.1498146524 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
9 Hb_000317_180 0.1509843694 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
10 Hb_000803_170 0.1517285454 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
11 Hb_010557_010 0.152456717 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
12 Hb_091433_050 0.1525441019 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
13 Hb_002272_220 0.1532880099 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000977_100 0.1535829715 - - PREDICTED: LOW QUALITY PROTEIN: acetolactate synthase small subunit 1, chloroplastic [Jatropha curcas]
15 Hb_000089_140 0.153939369 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
16 Hb_015175_040 0.1544345042 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000390_210 0.1544930171 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_005563_040 0.1545073878 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
19 Hb_004837_100 0.1548274035 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
20 Hb_002477_020 0.1553239233 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]

Gene co-expression network

sample Hb_047418_010 Hb_047418_010 Hb_004236_040 Hb_004236_040 Hb_047418_010--Hb_004236_040 Hb_000019_080 Hb_000019_080 Hb_047418_010--Hb_000019_080 Hb_058620_080 Hb_058620_080 Hb_047418_010--Hb_058620_080 Hb_003948_020 Hb_003948_020 Hb_047418_010--Hb_003948_020 Hb_004650_050 Hb_004650_050 Hb_047418_010--Hb_004650_050 Hb_000442_070 Hb_000442_070 Hb_047418_010--Hb_000442_070 Hb_004236_040--Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_004236_040--Hb_002411_100 Hb_004236_040--Hb_000019_080 Hb_004236_040--Hb_058620_080 Hb_005563_040 Hb_005563_040 Hb_004236_040--Hb_005563_040 Hb_004837_100 Hb_004837_100 Hb_000019_080--Hb_004837_100 Hb_000352_280 Hb_000352_280 Hb_000019_080--Hb_000352_280 Hb_000803_170 Hb_000803_170 Hb_000019_080--Hb_000803_170 Hb_172426_060 Hb_172426_060 Hb_000019_080--Hb_172426_060 Hb_001579_280 Hb_001579_280 Hb_000019_080--Hb_001579_280 Hb_010557_010 Hb_010557_010 Hb_000019_080--Hb_010557_010 Hb_000544_080 Hb_000544_080 Hb_058620_080--Hb_000544_080 Hb_009393_130 Hb_009393_130 Hb_058620_080--Hb_009393_130 Hb_058620_080--Hb_010557_010 Hb_058620_080--Hb_000803_170 Hb_011519_050 Hb_011519_050 Hb_058620_080--Hb_011519_050 Hb_007803_040 Hb_007803_040 Hb_058620_080--Hb_007803_040 Hb_003948_020--Hb_002411_100 Hb_000045_050 Hb_000045_050 Hb_003948_020--Hb_000045_050 Hb_003664_030 Hb_003664_030 Hb_003948_020--Hb_003664_030 Hb_003948_020--Hb_010557_010 Hb_000061_250 Hb_000061_250 Hb_003948_020--Hb_000061_250 Hb_000264_280 Hb_000264_280 Hb_003948_020--Hb_000264_280 Hb_009838_070 Hb_009838_070 Hb_004650_050--Hb_009838_070 Hb_000711_030 Hb_000711_030 Hb_004650_050--Hb_000711_030 Hb_091433_050 Hb_091433_050 Hb_004650_050--Hb_091433_050 Hb_003680_060 Hb_003680_060 Hb_004650_050--Hb_003680_060 Hb_004650_050--Hb_009393_130 Hb_004096_210 Hb_004096_210 Hb_004650_050--Hb_004096_210 Hb_000442_070--Hb_010557_010 Hb_000442_070--Hb_005563_040 Hb_011114_020 Hb_011114_020 Hb_000442_070--Hb_011114_020 Hb_000442_070--Hb_002411_100 Hb_006620_070 Hb_006620_070 Hb_000442_070--Hb_006620_070 Hb_000442_070--Hb_003948_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166816 0.122663 2.85487 1.60677 0.0340801 0.0308823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.321042 0.315673 0.52876 0.113791 3.9218

CAGE analysis